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基于高通量测序的连锁作图和QTL分析

已有 6181 次阅读 2013-9-27 05:55 |个人分类:QTL精细定位|系统分类:科研笔记| 连锁

1 Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population(http://www.ncbi.nlm.nih.gov/pubmed/23704960

2 PLoS One. 2013;8(3):e57438. doi: 10.1371/journal.pone.0057438. Epub 2013 Mar 4.
Genome wide allele frequency fingerprints (GWAFFs) of populations via genotyping by sequencing

这招也许可以用于基于选择性基因型鉴定的作图

3 Theor Appl Genet. 2013 Aug;126(8):2093-101. doi: 10.1007/s00122-013-2121-x. Epub 2013 May 21.
Transcriptome sequencing to produce SNP-based genetic maps of onion.

....................................补充资料

BMC Res Notes. 2013 Aug 2;6:307. doi: 10.1186/1756-0500-6-307.
Rapid genotyping by low-coverage resequencing to construct genetic linkage maps of fungi: a case study in Lentinula edodes.
BMC Plant Biol. 2013 Sep 24;13(1):141. [Epub ahead of print]
Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing.
PLoS One. 2013;8(3):e58700. doi: 10.1371/journal.pone.0058700. Epub 2013 Mar 19.
SLAF-seq: an efficient method of large-scale de novo SNP discovery and genotyping using high-throughput sequencing.
Sun X, Liu D, Zhang X, Li W, Liu H, Hong W, Jiang C, Guan N, Ma C, Zeng H, Xu C, Song J, Huang L, Wang C, Shi J, Wang R, Zheng X, Lu C, Wang X, Zheng H.
Source
Heilongjiang River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Harbin, China. sunxw2002@163.com
G3 (Bethesda). 2013 Mar 22. pii: g3.112.004929v3. doi: 10.1534/g3.112.004929. [Epub ahead of print]
An Ultra High-Density, Transcript-Based, Genetic Map of Lettuce.
Truco MJ, Ashrafi H, Kozik A, van Leeuwen H, Bowers J, Reyes Chin Wo S, Stoffel K, Xu H, Hill T, Van Deynze A, Michelmore RW.
Source
University of California, Davis.
G3 (Bethesda). 2013 Jul 8;3(7):1105-14. doi: 10.1534/g3.113.005819.
Sequence-based mapping of the polyploid wheat genome.

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1.

Identification of SNPs in closely related Temperate Japonica rice cultivars using restriction enzyme-phased sequencing.

Kim SI, Tai TH.

PLoS One. 2013;8(3):e60176. doi: 10.1371/journal.pone.0060176. Epub 2013 Mar 26.

PMID: 23555916 [PubMed - indexed for MEDLINE] Free PMC Article
Select item 223332982.

Reference genome-independent assessment of mutation density using restriction enzyme-phasedsequencing.

Monson-Miller J, Sanchez-Mendez DC, Fass J, Henry IM, Tai TH, Comai L.

BMC Genomics. 2012 Feb 14;13:72. doi: 10.1186/1471-2164-13-72.

PMID: 22333298 [PubMed - indexed for MEDLINE] Free PMC Article

................

 2013 Aug 26. [Epub ahead of print]

Genetic Mapping and Genomic Selection Using Recombination Breakpoint Data.

..........................................

User guide for mapping-by-sequencing in Arabidopsis(http://yunpan.cn/QGuCWJgyP8rU8)

.........................................

Mapping by sequencing the Pneumocystis genome using the ordering DNA sequences V3 tool.
Xu Z, Lance B, Vargas C, Arpinar B, Bhandarkar S, Kraemer E, Kochut KJ, Miller JA, Wagner JR, Weise MJ, Wunderlich JK, Stringer J, Smulian G, Cushion MT, Arnold J.
Genetics. 2003 Apr;163(4):1299-313.
Fast-forward genetics enabled by new sequencing technologies.
Schneeberger K, Weigel D.
Trends Plant Sci. 2011 May;16(5):282-8. doi: 10.1016/j.tplants.2011.02.006. Epub 2011 Mar 24. Review.
PMID: 21439889 [PubMed - indexed for MEDLINE]
Synteny-based mapping-by-sequencing enabled by targeted enrichment.
Galvão VC, Nordström KJ, Lanz C, Sulz P, Mathieu J, Posé D, Schmid M, Weigel D, Schneeberger K.
Plant J. 2012 Aug;71(3):517-26. doi: 10.1111/j.1365-313X.2012.04993.x. Epub 2012 May 14.
PMID: 22409706 [PubMed - indexed for MEDLINE]
Fast isogenic mapping-by-sequencing of ethyl methanesulfonate-induced mutant bulks.
Hartwig B, James GV, Konrad K, Schneeberger K, Turck F.
Plant Physiol. 2012 Oct;160(2):591-600. doi: 10.1104/pp.112.200311. Epub 2012 Jul 26.
PMID: 22837357 [PubMed - indexed for MEDLINE] Free PMC Article

.................

Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing
URL: http://www.biomedcentral.com/1471-2229/13/141/abstract
Zhang Y , Wang L , Xin H , Li D , Ma C , Ding X , Hong W , Zhang X ,
BMC Plant Biology 2013, 13 :141 (24 September 2013)

 



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