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三大力场顺序应该是Amber, Charmm, OPLS-AA.
Charmm力场:
能量形式:
多了一项Urey-Bradley,是charmm的特色,反映的是bond-angle vibration between a triplet of atoms.
1998年:Charmm22是和charmm package version 22一起发布的。
https://pubs.acs.org/doi/abs/10.1021/jp973084f
提到了当时的力场情形:Recently, Kaminski and Jorgensen have stressed the importance of the correct representation of liquid properties by molecular mechanics force fields. They made comparisons of a new OPLS all-atom force field, AMBER 94, and MMFF. The best agreement for liquid NMA was obtained for the OPLS force field; the calculated values ∆Hvap = 13.61 kcal/mol and a molecular volume of 133.8 Å3 are almost identical to those reported here.
gromacs软件包里的是charmm27 with cmap.
2001年:扩展到nucleic acids,称为charmm27:
2004年:with the CMAP backbone correction:
https://onlinelibrary.wiley.com/doi/abs/10.1002/jcc.20065
对于TRP的CA-C,对应CT1-C. bond interaction为b0=0.149 ,k_b=209200.0. CA的电荷为0.07,均来自charmm22文章。
【发展】
CHARMM22*,类似ff99SB*, with newly modified backbone torsion potentials done by DE Shaw.
2009: CHARMM General Force Field (CGenFF): for drug-like molecules
https://onlinelibrary.wiley.com/doi/abs/10.1002/jcc.21367
2012,charmm36:
https://pubs.acs.org/doi/10.1021/ct300400x
【近期应用】
2013年:https://pubs.acs.org/doi/10.1021/jp401563n
and they say:
“We found that AMBER does not predict any β-sheet structure, whereas GROMOS favors antiparallel β-sheet structures, and OPLS predicts diverse structures. The impact of all-atom force fields on the stability of preformed β-sheet oligomers has also been discussed.”
说明charmm27 and tip3p也是可以的。
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