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Science/AAASScience
Editors' Choice
 

25 APRIL 2014VOLUME 344, ISSUE 6182


Summaries of recent literature by Science editors.


RESEARCH HIGHLIGHTS


Linguistics

The distribution of the ~7000 remaining linguistic groups around the globe is highly heterogeneous, with high linguistic diversity in Africa (2562 living languages) and Asia and the Pacific (2762), and less diversity in Europe (396) and the Americas (1132). As with species distribution, evidence—for example, latitudinal gradients in the density of some human languages and a correlation between landscape elevation and language density—suggests that the environment plays an important role in language distributions.

Using a variety of publicly available data sets, Axelsen and Manrubia compare 14 environmental variables, including human population density, against linguistic diversity both globally and for several continental regions (the Americas, Europe, Africa, and the Asia Pacific region). Statistical analysis of partial correlations between the 14 different factors reveals specific local dependencies in individual regions. For example, low linguistic diversity in the Americas is most correlated with population density and linked to the effects of European colonization. Globally, rivers and landscape roughness (altitude) are the most important factors underlying high linguistic diversity. Landscape roughness may promote linguistic isolation and diversification, whereas the transportation function that rivers provide may have brought disparate language groups together, seeding the formation of new ones.

Proc. R. Soc. London Ser. B 10.1098/rspb.2013.3029 (2014).


Geochemistry

Based on the distribution of other noble gases, Earth's atmosphere is apparently depleted in Xe. Although some may have been lost to space, Earth's interior—the original source of atmospheric gases—could also act as a reservoir by preferentially holding onto Xe as the planet formed and differentiated. Because of the size of the mantle, it would be an ideal candidate; however, it is unclear whether Xe reacts with the major Si-rich phases of the mantle at the corresponding pressures and temperatures. Zhu et al. performed total energy calculations at the extreme temperature and pressure conditions of Earth's inner core to determine that Xe reacts with Fe and Ni, the two dominant constituents of the solid inner core. Crystal structure predictions found several stable phases of Xe-Fe/Ni alloys, including the stable phases of XeFe3 and XeNi3, suggesting that the inner core may be Earth's missing reservoir of Xe.

Nat. Chem. 10.1038/NCHEM.1925 (2014).


Materials Science

Cleaning up oil or an industrial solvent after a spill is complicated by the danger that the combustible liquid might catch fire. Ruan et al. sought to minimize this risk by taking advantage of the flame-retardant properties of melamine. By sequentially immersing a commercial melamine-formaldehyde sponge in solutions of dopamine and then fluoroalkyl thiols, they rendered the porous material superhydrophobic. A series of tests showcased the sorption properties of the modified sponge: efficient uptake (on the order of 100 times its weight) of common solvents as well as crude oil, followed by recovery through mechanical squeezing. The material proved resilient to cycling 100 times, as well as an hour's worth of heating to 200°C or cooling by liquid nitrogen. In a comparison with a polypropylene-based sorbent, it also showed substantially greater resistance to combustion. The authors suggest that the simplicity of the synthetic protocol bodes well for possible scale-up manufacturing.

Angew. Chem. Int. Ed. 53, 10.1002/anie.201400775 (2014).


Biomaterials

When attacked, hagfish will release protein threads and mucin vesicles, which interact with seawater to form copious quantities of slime. Before release, the threads exist as coiled skeins that occupy almost the entire volume of specialized gland thread cells. The threads unravel in a fraction of a second from a 150-μm-long ellipsoid bundle to a thread that is 100 times longer, which clearly requires sophisticated ordering within the cell. As the threads also have comparable mechanical properties to those of spider silk, there is interest in understanding the organization and morphology of the coiled thread in both mature and immature gland thread cells, in order to design synthetic reactors. Using electron microscopy, Winegard et al. were able to identify changes in thread length, diameter, and morphology as the cells matured. Beyond this, they were able to see changes in the cell shape as it shifted from being rounded after differentiation to becoming spindle-shaped, with a more conical profile and flared base. This suggests that the cell nucleus acts as a template over which the staggered thread loops form. Using a focused ion beam within a scanning electron microscope, the three-dimensional structure of the loops was determined, including the ways that adjacent layers overlay and the cabled appearance of the skein where the threads run circumferentially along the outer surface.

Nat. Comm. 10.1038/ncomms4534 (2014).


Genetics

Epigenetic changes, such as gene methylation, can be detected directly by examining the status of DNA within specific tissues. However, it is desirable to identify epigenetic changes from afar, especially in tissues that may be hard to survey, such as the brain. Working with a mouse model of Cushing's disease, characterized by changes in methylation as a response to exposure to glucocorticoids, Ewald et al. found that methylation and expression of the Fkpb5 gene within the hippocampus correlated with its degree of methylation in the blood. Although limited by the examination of only a single gene, the observed correlation highlights that for some diseases, it may be possible to use blood monitoring to infer epigenetic changes in the brain.

Psychoneuroendocrinology 44, 112 (2014).


Cell Biology

The neurotransmitter molecule γ-aminobutyric acid (GABA) promotes sleep in mammals and flies, but the molecular details of this regulation have not been clear. Chen et al. provide new insight into this complex pathway, finding that GABA transaminase (GABAT), a mitochondrial enzyme that breaks down GABA, controls GABA amounts to affect sleep in Drosophila. Sleep is controlled by the protein sleepless (SSS), which is expressed in neurons of the fly brain. Its absence in mutant flies increases neural activity and decreases sleep. Mutant flies lacking SSS expressed more GABAT in the brain. Consequently, GABA amounts decreased by 30% in the brain, and compared to control flies, mutant flies slept less. Disrupting GABAT expression increased GABA amounts and boosted total daily sleep. Furthermore, reducing GABAT in mutant flies lacking SSS restored sleep. Flies expressing mutant GABAT showed an increase in overall daily sleep, and the time it took flies to fall asleep was reduced. Moreover, treatment of adult flies lacking SSS with ethanolamine O-sulfate, an inhibitor of GABAT, rescued sleep. These results suggest that SSS promotes sleep and that its absence increases neuron excitability, which may demand more energy. This could alter cell metabolism in neighboring glia, including changes in GABAT activity in the mitochondria. Changes in GABAT activity have been implicated in epilepsy (characterized by increased neural activity) and other neuropsychiatric disorders. The connection of GABAT and cell metabolism to sleep control may explain sleep problems associated with these conditions.

Mol. Psychiatry 10.1038/mp.2014.11 (2014).


Biophysics

Atomic force microscopy (AFM) is a powerful tool used both for subnanometer imaging and for mechanical probing of molecules. The key measurement in AFM is the deflection of a cantilever, which depends on the force it experiences. AFM is used in single-molecule force spectroscopy to monitor the folding and unfolding of biomolecules. This application requires sensitivity to very small changes in force on short time scales, but also requires long-term force stability. Current AFMs are optimized either for short-term force precision (achieved by using shorter, stiffer cantilevers to reduce hydronamic drag) or for long-term force stability (better performance comes from longer, softer cantilevers). Bull et al. modified a short cantilever with a focused ion beam to achieve excellent short-term precision and long-term stability. AFM cantilevers are typically gold-coated to improve signal intensity, but the gold reduces stability. Removal of the gold except for a protected patch at the end of the cantilever maintained high signal without compromising stability. A protein unfolding assay highlighted the short-term precision, whereas stretching a surface-anchored protein showed sub-pN performance over a force bandwidth of 0.01 to 1000 Hz. Monitoring abrupt unfolding of a protein showed that the cantilever had a temporal response time of about 70 μs. These responsive yet stable cantilevers should benefit diverse AFM studies.

ACS Nano. 10.1021/nn5010588 (2014).

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Science/AAASScience
Table of Contents
 

25 APRIL 2014VOLUME 344, ISSUE 6182


In this week's issue:


RESEARCH SUMMARIES


Editor summaries of this week's papers.

Highlights of the recent literature.


EDITORIAL




NEWS OF THE WEEK


In science news around the world, the European Space Agency's new environmental satellite Sentinel-1A sends back its first radar images of Earth, polio spreads farther into Central Africa, China releases new information on its polluted soil, and more.


NASA's Cassini spacecraft spies a new moon forming in Saturn's outermost ring, which scientists hope will offer insight into the formation of the planet's other icy moons within its now-vanished, even more massive rings.


Science has won two awards this past month: Contributing correspondent Ann Gibbons won an award from the Society for American Archaeology for her writing in the immersive multimedia story "The Thousand-Year Graveyard"; and Deputy News Editor Leslie Roberts won an award from the Association of Health Care Journalists for her story "The Art of Eradicating Polio."




NEWS & ANALYSIS


Climate Science

New analyses show that major climate data sets have overstated the recent slowdown in global warming.


Genomics

Sequencing the genome and assessing gene activity in various tissues in the tsetse fly led to new insights into its biology and the control of parasitic diseases transmitted by this insect.


Biomedical Funding

Responding to complaints, the National Institutes of Health will no longer limit the number of times a researcher can resubmit a rejected grant proposal.


Neurodegeneration

A research team has identified a potential new drug lead for Alzheimer's disease: a small molecule that stabilizes the components of retromers, molecular complexes that act like recycling bins in cells.



NEWS FOCUS


The need to store energy from wind, solar, and other renewable energy sources could spark a revival of a dormant battery technology.


Hard data and survivor interviews are helping researchers unravel the science of Supertyphoon Haiyan and its storm surge.


Storm chaser Josh Morgerman witnessed Supertyphoon Haiyan as it hit Tacloban, and he went back months later to document the storm's track and impact.



LETTERS



BOOKS ET AL.


Science and Society

Franklin explores how the development of in vitro fertilization into a routine procedure has changed our understanding of technology and biology.


Internet and Society

Examining technologies and policies, DeNardis considers the politics behind Internet protocols and the many groups vying to influence them.


A listing of books received at Science during the week ending 18 April 2014.



POLICY FORUM


Land Use

Brazil's controversial new Forest Code grants amnesty to illegal deforesters, but creates new mechanisms for forest conservation.

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PERSPECTIVES


Planetary Science

A better inventory of lunar volatiles will help improve our understanding of the origin and evolution of the Earth-Moon system. [Also see Report by Boyce et al.]


Genetics

Single-cell sequencing reveals the microdiversity of the most abundant photosynthetic organism on Earth. [Also see Report by Kashtan et al.]


Chemistry

A synthetic route photoactivates one reactant and then controls stereochemistry of subsequent steps to form a single isomer of a four-membered ring. [Also see Report by Du et al.]


Biophysics

Engineered channelrhodopsins conduct anions rather than cations, changing the action potential of neurons. [Also see Reports by Wietek et al. and Berndt et al.]


Structural Biology

Do alternating stacking modes of nucleosomes underlie the compaction of chromatin? [Also see Research Article by Song et al.]


Neuroscience

A combination of technologies reveals which neurons constitute circuits for specific behaviors in Drosophila larvae. [Also see Research Article by Vogelstein et al.]


Geochemistry

Field projects are beginning to demonstrate the potential for carbon storage in basaltic rocks.



ASSOCIATION AFFAIRS



RESEARCH ARTICLES


The structure of a segment of chromatin reveals the importance of the linker histone in determining its conformation. [Also see Perspective by Travers]


Blood-sucking tsetses transmit protozoan parasites, harbor multiple symbionts, reproduce viviparously, and lactate.


An atlas is generated to reveal activation of which specific neurons in a Drosophilalarva produce specific behaviors. [Also see Perspective by O'Leary and Marder]



REPORTS


A two-catalyst combination offers long-sought selectivity in intermolecular coupling of olefins to form four-membered rings. [Also see Perspective by Neier]


An unusually bright supernova faded away to reveal a foreground galaxy responsible for bending and amplifying its light.


Hydrogen-rich apatite crystals in lunar volcanic rocks indicate self-inflicted loss of fluorine from basaltic melts. [Also see Perspective by Anand]


Soil has been frozen to the central part of the bed of the Greenland Ice Sheet for at least 2.7 million years.


The variable ratio of denitrification to anammox in the ocean is due to variations in organic matter quality and quantity.


A class of directly light-gated anion channels can be used to block neuronal output in a fully reversible fashion. [Also see Perspective by Hayashi and Report by Berndt et al.]


Mitochondrial posttranscriptional variation is common among humans and can be attributed to a nuclear gene.


Covariation between the core alleles and flexible gene content of a marine cyanobacterium underpins vast diversity. [Also see Perspective by Bowler and Scanlan]


A class of directly light-gated anion channels can be used to block neuronal output in a fully reversible fashion. [Also see Perspective by Hayashi and Report by Wietek et al.]


Brain imaging reveals how the brain can selectively attend to one of two overlapping objects.


In plants, light-dependent regulation of nuclear alternative splicing involves a signal generated within the chloroplast.



TECHNICAL COMMENTS



PODCAST


On this week's show: the genome sequence of the tsetse fly and a roundup of stories from our daily news site.



NEW PRODUCTS


A weekly roundup of information on newly offered instrumentation, apparatus, and laboratory materials of potential interest to researchers.



FROM THE AAAS OFFICE OF PUBLISHING AND MEMBER SERVICES


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24 APRIL 2014

Today's news from Science and ScienceInsider
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24 APRIL 2014 | Funding
Unusual step by NSF's oversight body highlights ongoing dispute with Congress


24 APRIL 2014 |


24 APRIL 2014 |


24 APRIL 2014 | Physics
Virtual birds reveal physical properties of animal herds


24 APRIL 2014 | Health
Exploding numbers reflect more widespread testing, Saudi deputy health minister says


24 APRIL 2014 |


24 APRIL 2014 | Biology
Plant ecologists find the first shape-shifting plant that can mimic multiple hosts


24 APRIL 2014 | Scientific Community
Listen to a roundup of some of our favorite stories from the week


24 APRIL 2014 | Biology
Agency will offer I-Corps entrepreneurship boot camps


23 APRIL 2014 | Earth
NRC report offers recommendations to research and improve response to an oil spill in the challenging polar region


23 APRIL 2014 | Climate
Scientists may have underestimated the amount of pollution reaching the stratosphere


23 APRIL 2014 | Physics
Scientists accidentally create never-before-seen twisted shapes


23 APRIL 2014 |


23 APRIL 2014 | Physics
Properties of magnetized iron show strong resemblance to party affiliation


23 APRIL 2014 |


23 APRIL 2014 | Brain Behavior
Technique may aid people with cochlear implants


23 APRIL 2014 | Biology
Two new analyses of the male sex chromosome have concluded that its genes have vital, wide-reaching effects on every cell in the body


23 APRIL 2014 |


23 APRIL 2014 |

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Science/AAASScience
News This Week
 
25 APRIL 2014VOLUME 344, ISSUE 6182

A roundup of the week's top stories in Science:

NEWS OF THE WEEK

In science news around the world, the European Space Agency's new environmental satellite Sentinel-1A sends back its first radar images of Earth, polio spreads farther into Central Africa, China releases new information on its polluted soil, and more.


NASA's Cassini spacecraft spies a new moon forming in Saturn's outermost ring, which scientists hope will offer insight into the formation of the planet's other icy moons within its now-vanished, even more massive rings.


Science has won two awards this past month: Contributing correspondent Ann Gibbons won an award from the Society for American Archaeology for her writing in the immersive multimedia story "The Thousand-Year Graveyard"; and Deputy News Editor Leslie Roberts won an award from the Association of Health Care Journalists for her story "The Art of Eradicating Polio."



NEWS & ANALYSIS

Climate Science

Major climate data sets have underestimated the rate of global warming in the last 15 years owing largely to poor data in the Arctic, the planet's fastest warming region. A dearth of temperature stations there is one culprit; another is a data-smoothing algorithm that has been improperly tuning down temperatures there. The findings come from an unlikely source: a crystallographer and graduate student working on the temperature analyses in their spare time.


Genomics

The tsetse fly is best known as the vector for the trypanosome parasites that cause sleeping sickness and a disease in livestock called nagana. But its biology is quite unusual. Both sexes feed solely off blood, whereas many blood-sucking insects supplement blood meals with nectar. And females give birth to live young that have been nourished by specially produced milk. Now, the genome sequence and studies of gene activity in various tissues have uncovered the fly's special repertoire of proteins for procuring, filtering, and packaging the blood and for viviparity. They also help clarify the fly's relationship with microbes residing in its tissues. These insights should lead to better control strategies to protect the 70 million Africans at risk for sleeping sickness.


Biomedical Funding

The National Institutes of Health is revising its "two strikes" rule, which allowed researchers only one chance to revise a rejected grant application before having to start over with a new idea—a rule that critics worried was especially hard on young investigators. Instead, the agency announced on 17 April, applicants can now resubmit an identical proposal as many times as they like.


Neurodegeneration

By stabilizing the components of retromers, molecular complexes that act like recycling bins in cells, a recently identified compound could slow or stop the implacable spread of a protein fragment called β amyloid, a likely culprit in neuron death in Alzheimer's disease. The work builds on growing evidence that retromer dysfunction plays a role in the neurodegenerative disorder. Although the research on the possible small molecule drug is preliminary—so far the published work has only been done in cells—the new results have nonetheless impressed some veterans of the Alzheimer's field.


NEWS FOCUS

Fossil fuels power modern society by generating heat, but much of that heat is wasted. Semiconductor devices called thermoelectrics can reclaim some of it by converting it into power, but they remain too inefficient and expensive for widespread application. Now, scientists in Illinois have used a cheap, well-known material to create the most heat-hungry thermoelectric so far. In the process, the researchers say, they learned valuable lessons that could push the materials over the commercial threshold. If that happens, thermoelectrics could one day power cars and scavenge energy from engines, boilers, and electrical plants.


Researchers are gaining insights into what made Supertyphoon Haiyan so powerful and devastating through post-storm surveys and analyses. The tropical cyclone's ferocity resulted from a buildup of heat in subsurface waters in the western North Pacific; the devastating surge was a quirk of geography in which a narrow bay funneled water toward the heavily populated city of Tacloban. There is no obvious link to global warming. But scientists warn that reducing the toll from future storms will depend on moving residents and buildings away from vulnerable coastlines.


Millions around the world got a first-hand look at what it was like to be in Tacloban while it was pummeled by Supertyphoon Haiyan's winds and then flooded by its surge, thanks to on-the-scene video captured by Josh Morgerman and his storm-chasing colleagues. Morgerman went further, returning to the region several months later to interview survivors and document patterns of wind damage to trees and buildings. His results will help scientists interpret satellite observations of the storm.








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