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Connect Cytoscape with R

已有 3645 次阅读 2012-9-5 02:04 |个人分类:R|系统分类:科研笔记| cytoscape, curl-config

1) install R packages (RCurl, XML, XMLRPC)
 Error "Cannot find curl-config" might be appeared, as Curl is a little tricky for its two dev packages for TLS and OpenSSL. To solve this problem, determine which package do you need in your Ubuntu with command:apt-cache search libcurl3-dev, and then install it with command (sudo apt-get install ****).

Error "Cannot find xml2-config " may be occurred for install "XML" package. To install "xml2-config", using the command "sudo apt-get install libxml2-dev".

The "XMLRPC" package can be downloaded from http://www.omegahat.org/XMLRPC/. XMLPRC can be used for communicating between processes on a single machine or for accessing Web services from within R.

2) install Cytoscape (version 2.7 or higher) from here.

3) install CytoscapeRPC



  
    


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