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Windows平台下搭建Eclipse+python+biopython环境

已有 5535 次阅读 2012-7-21 15:39 |个人分类:Python|系统分类:科研笔记| Python, windows, Eclipse, Biopython, GFF

OS: Win7 32bit
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1) download "Eclipse IDE for Java EE Developers" from http://www.eclipse.org/downloads/,解压缩到指定文件夹.

2) download python 2.7.3 (Windows x86 MSI Installer (2.7.3) (sig)) from http://www.python.org/download/releases/2.7.3/, double click and install.

3) 安装c编译器(VS2010)

4)安装biopython依赖软件包Numpy (numpy-1.6.2-win32-superpack-python2.7.exe,http://scipy.org/Download)

5)安装biopython (biopython-1.60.win32-py2.7.exe, http://biopython.org/wiki/Download).
  Note: 提示"cannot find vcvarsall.bat"错误,找到python 2.7安装文件夹中的“msvc9compiler.py”文件,修改
         vc_env = query_vcvarsall(version, plat_spec) 为: vc_env = query_vcvarsall(10.0, plat_spec)

  Note:download ez_setup.py (http://pypi.python.org/pypi/setuptools#windows) and 执行这个脚本安装easy install setuptools

   Note: 安装GFF parsing module (http://biopython.org/wiki/GFF_Parsing)





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