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Donald Seto1*, James Chodosh2, J. Rodney Brister3, Morris S. Jones4 and members of the Adenovirus Research Community5
JVI Accepts, published online ahead of print on 30 March 2011
J. Virol. doi:10.1128/JVI.00354-11
1. “Type” will succeed “serotype”, thus
reflecting the prevalence of genome sequence data usage; it is also already in
usage as per the ICTV definitions. 2. Previously named HAdVs transition to the new
format; e.g., “serotype HAdV-C1” will become “type HAdV-C1”, where the letter C
indicates the adenovirus species (currently species A-G). Each adenovirus type
will have a unique, consecutively assigned number, i.e., there will not be an
HAdV-D54 and an HAdV-C54. 3. Acceptance of a new type will require
analysis of the complete genome sequence, including phylogenomics. 4. Serum neutralization will continue to be used
as an additional criterion, per the ICTV definition. This should be by actual serum neutralization
and hemagglutination inhibition, rather than imputed derivation by limited DNA
sequencing of the epitopes. 5. Naming priority will follow the order in
which accessions are released in the public sequence databases. Adherence to
the Bermuda principles will be encouraged, whereby sequences are released as
soon as possible (see http://www.ornl.gov/sci/techresources/Human_Genome/publicat/hgn/v7n6/19intern.shtml). 6. Recombination is an accepted feature of HAdV
evolution and will be accommodated. Recombinants will be classified as novel
types if there are sufficient genomic, biological or pathogenic differences
from related types. Until
peer-reviewed publication, a provisional standardized name will be used that
reflects critical serological markers and similarities to established types in
species, penton base and serology-based motifs in hexon and fiber, plus the
year and place of isolation. Thus, the provisional name for HAdV-D53 was HAdV-D
/Hannover/“unique identifier”/2005/P37/H22/F8.
For reference, “P” refers to the penton base, “H” refers to the hexon
loop 1 region and “F” refers to the fiber knob; numbers refer to established
type with the highest nucleotide identity, in the respective regions. The “unique identifier” is a “lab designation”
or “strain name”, e.g., “2005-IAI-1” for HAdV-D53 isolate 1 and “2005-IAI-2”
for HAdV-D53 isolate 2, should both genomes be deposited in GenBank.
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