By the concept of quantum mechanics, the movement of the particle is random and uncertain, proton coordinate or center of mass coordinate in hydrigen atom are random and uncertain referring to the laboratory,
Okay, there is some fuzziness in quantum mechanics. This is very striking as compared to the classical case. But again, I think you have to be generally careful applying classical notions to quantum mechanics.
Therefore, the spectrum experimental data of hydrogen atom can not be applied to confirm quantum mechanics.
But the mathematical predictions of non-relativistic quantum mechanics match the observed specta of the hydrogen atom very well. Not perfectly as you need to add relativistic corrections or use the Dirac equation. Anyway, we have good descriptions of the hydrogen atom in quantum mechanics.
Also, even the more weird and highly non-classical predictions of quantum mechanics have been shown to agree well with nature over and over again. For example the wave nature of electrons is established, as is the predictions of the double slit experiment with electrons and we also have experimental verification of quantum entangelment. We have lasers, microchips, the computer you are using to read this and so on... The applicability of non-relativistic quantum mechanics to nature and indeed engineering is not in question.