Connect Cytoscape with R

马闯 2012-9-5 02:04

1) install R packages (RCurl, XML, XMLRPC) Error " Cannot find curl-config" might be appeared, as Curl is a little tricky for its two dev packages for TLS and OpenSSL . To solve this problem, determine which package do you need in your Ubuntu with command: apt-cache sear ...

个人分类: R|3352 次阅读|没有评论

Installing R from CRAN on Ubuntu: No Public Key Error

马闯 2012-6-14 19:36

1) adddeb http://my.favorite.cran.mirror/bin/linux/ubuntu oneiric/ to /etc/apt/sources.list 2) update sudo apt-get update 3) install sudo apt-get install r-base (or r-base-dev) 4) Fix No Public Key Error (" W : GPG error : http : //lib.stat.cmu.edu oneiric/ Release: T ...

个人分类: R|4416 次阅读|没有评论

From cluster to tree view

马闯 2012-3-10 09:33

Antoine Lucas developed a R package "ctc" to get the bridge between hclust in R and treeview in windows. To install ctc package, do remember to use biocLite source("http://bioconductor.org/biocLite.R") biocLite("ctc")

个人分类: R|2899 次阅读|没有评论

Steps to generate R packages

马闯 2012-3-10 09:29

There are some differences to generate R packages on Linux/Windows platforms. Here are the steps for Linux. 1) Upgrade your R to the latest version. 2) Generate RD files: package.skeleton(name = packagename, code_files=c(**.R, ***.R)) 3) Annotate RD files with the informa ...

个人分类: R|2430 次阅读|没有评论

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