0_based numbering: the initial element of a sequence is assigned the index 0; 1_based numbering: the initial element of a sequence is assigned the index 1; BAM/BED data are 0-based and SAM data are 1-based. An example shows below: The screenshot came from a sam file. ...
Here I want to show how to convert coordinates from mm10 to mm9 based on command line. And you also can do this using the web interface at http://genome.ucsc.edu/cgi-bin/hgLiftOver The operating system in my computer is Ubuntu 18.10 (64-bit). Liftover usage: liftOver inpu ...