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38个水稻全基因组序列

已有 4834 次阅读 2020-11-25 19:06 |个人分类:资料|系统分类:科研笔记

我搜集的水稻基因组序列,如果有新序列出来,请告诉我下

16个下面这篇文章提到的水稻基因组

2020 A platinum standard pan-genome resource that represents the population stru.pdf

包括这些品种:

Azucena_GJ-trop1

IR64_XI-1B1

IRGC_109232-1_XI-3B2

IRGC12485_cB

IRGC132424_XI-2A

IRGC19961_GJ-trop2

IRGC34749_cA2

IRGC52339_XI-2B

IRGC53418_XI-1B2

IRGC65972_XI-3B1

IRGC80273_GJ-subtrp

IRGC81487-1_XI-3A

mh63_2017_XI-adm(有两个基因组版本)

N22_v1

RAP_IRGSP-1.0_genome.fasta(最常用的水稻参考基因组)

zs97_2017(有两个基因版本)

15个其它水稻品种基因组:

A123_Japonica

Bio226_Indica

Carolina_Gold

HEG4_Japonica

Hitomebore_Japonica

HR12_Indica

IR8_Indica

kittake_japonica

Koshihikari_Japonica

Lperr_v1.4

R498

R600_indica-japonica

tetep

ZH11

9311(多个版本)

7个野生稻基因组:

O.barthii_v1.3

O.brachyantha_v1.4

O.glaberrima_v1

O.glumaepatula_v1.5

O.nivara_v1.0

O.punctata_v1.2

O.rufipogon_W1943

已经从GenBank获得全部序列,文件比较大,看我啥时候能全部上传到云盘上。

涉及的accession number(根据冒号右边的序列号,可以从GenBank获得相应的序列)

chromosome 1: CM025769.1

chromosome 2: CM025770.1

chromosome 3: CM025771.1

chromosome 5: CM025772.1

chromosome 6: CM025773.1

chromosome 7: CM025774.1

chromosome 8: CM025775.1

chromosome 9: CM025776.1

chromosome 10: CM025777.1

chromosome 11: CM025778.1

chromosome 12: CM025779.1 genome1

chromosome 1: CM020658.1

chromosome 2: CM020659.1

chromosome 3: CM020660.1

chromosome 4: CM020661.1

chromosome 5: CM020662.1

chromosome 6: CM020663.1

chromosome 7: CM020664.1

chromosome 8: CM020665.1

chromosome 9: CM020666.1

chromosome 10: CM020667.1

chromosome 11: CM020668.1

chromosome 12: CM020669.1 genome2

chromosome 3: CM025766.1

chromosome 7: CM025767.1

chromosome 12: CM025768.1

chromosome 1: CM012053.1 27

chromosome 2: CM012054.1

chromosome 3: CM012055.1

chromosome 4: CM012056.1

chromosome 5: CM012057.1

chromosome 6: CM012058.1

chromosome 7: CM012059.1

chromosome 8: CM012060.1

chromosome 9: CM012061.1

chromosome 10: CM012062.1

chromosome 11: CM012063.1

chromosome 12: CM012064.1 38 genome3

chromosome 1: CM020876.1 39

chromosome 2: CM020877.1

chromosome 3: CM020878.1

chromosome 4: CM020879.1

chromosome 5: CM020880.1

chromosome 6: CM020881.1

chromosome 7: CM020882.1

chromosome 8: CM020883.1

chromosome 9: CM020884.1

chromosome 10: CM020885.1

chromosome 11: CM020886.1

chromosome 12: CM020887.1 50 genome4

chromosome 1: CM020621.1  51

chromosome 2: CM020622.1

chromosome 3: CM020623.1

chromosome 4: CM020624.1

chromosome 5: CM020625.1

chromosome 6: CM020626.1

chromosome 7: CM020627.1

chromosome 8: CM020628.1

chromosome 9: CM020629.1

chromosome 10: CM020630.1

chromosome 11: CM020631.1

chromosome 12: CM020632.1 62 genome5

chromosome 1: CM012941.1

chromosome 2: CM012942.1

chromosome 3: CM012943.1

chromosome 4: CM012944.1

chromosome 5: CM012945.1

chromosome 6: CM012946.1

chromosome 7: CM012947.1

chromosome 8: CM012948.1

chromosome 9: CM012949.1

chromosome 10: CM012950.1

chromosome 11: CM012951.1

chromosome 12: CM012952.1 74 genome6

chromosome 1: CM014923.1

chromosome 2: CM014924.2

chromosome 3: CM014925.2

chromosome 4: CM014926.2

chromosome 5: CM014927.2

chromosome 6: CM014928.2

chromosome 7: CM014929.2

chromosome 8: CM014930.2

chromosome 9: CM014931.2

chromosome 10: CM014932.2

chromosome 11: CM014933.2

chromosome 12: CM014934.2 86 genome7

chromosome 1: CP018157.1

chromosome 2: CP018158.1

chromosome 3: CP018159.1

chromosome 4: CP018160.1

chromosome 5: CP018161.1

chromosome 6: CP018162.1

chromosome 7: CP018163.1

chromosome 8: CP018164.1

chromosome 9: CP018165.1

chromosome 10: CP018166.1

chromosome 11: CP018167.1

chromosome 12: CP018168.1 98 genome8

chromosome 1: CP012609.1

chromosome 2: CP012610.1

chromosome 3: CP012611.1

chromosome 4: CP012612.1

chromosome 5: CP012613.1

chromosome 6: CP012614.1

chromosome 7: CP012615.1

chromosome 8: CP012616.1

chromosome 9: CP012617.1

chromosome 10: CP012618.1

chromosome 11: CP012619.1

chromosome 12: CP012620.1 110 genome9

chromosome 1: CM020754.1

chromosome 2: CM020755.1

chromosome 3: CM020756.1

chromosome 4: CM020757.1

chromosome 5: CM020758.1

chromosome 6: CM020759.1

chromosome 7: CM020760.1

chromosome 8: CM020761.1

chromosome 9: CM020762.1

chromosome 10: CM020763.1

chromosome 11: CM020764.1

chromosome 12: CM020765.1 genome10 122

chromosome 1: CM020670.1

chromosome 2: CM020671.1

chromosome 3: CM020672.1

chromosome 4: CM020673.1

chromosome 5: CM020674.1

chromosome 6: CM020675.1

chromosome 7: CM020676.1

chromosome 8: CM020677.1

chromosome 9: CM020678.1

chromosome 10: CM020679.1

chromosome 11: CM020680.1

chromosome 12: CM020681.1 g11 134

chromosome 1: CM020646.1

chromosome 2: CM020647.1

chromosome 3: CM020648.1

chromosome 4: CM020649.1

chromosome 5: CM020650.1

chromosome 6: CM020651.1

chromosome 7: CM020652.1

chromosome 8: CM020653.1

chromosome 9: CM020654.1

chromosome 10: CM020655.1

chromosome 11: CM020656.1

chromosome 12: CM020657.1 g12 146

chromosome 1: CM003922.2

chromosome 2: CM003923.2

chromosome 3: CM003924.2

chromosome 4: CM003925.2

chromosome 5: CM003926.2

chromosome 6: CM003927.2

chromosome 7: CM003928.2

chromosome 8: CM003929.2

chromosome 9: CM003930.2

chromosome 10: CM003931.2

chromosome 11: CM003932.2

chromosome 12: CM003933.2 g13 158

chromosome 1: CM020682.1

chromosome 2: CM020683.1

chromosome 3: CM020684.1

chromosome 4: CM020685.1

chromosome 5: CM020686.1

chromosome 6: CM020687.1

chromosome 7: CM020688.1

chromosome 8: CM020689.1

chromosome 9: CM020690.1

chromosome 10: CM020691.1

chromosome 11: CM020692.1

chromosome 12: CM020693.1 g14 170

chromosome 1: CM003910.2

chromosome 2: CM003911.2

chromosome 3: CM003912.2

chromosome 4: CM003913.2

chromosome 5: CM003914.2

chromosome 6: CM003915.2

chromosome 7: CM003916.2

chromosome 8: CM003917.2

chromosome 9: CM003918.2

chromosome 10: CM003919.2

chromosome 11: CM003920.2

chromosome 12: CM003921.2 g15 182

chromosome 1: CM020718.1

chromosome 2: CM020719.1

chromosome 3: CM020720.1

chromosome 4: CM020721.1

chromosome 5: CM020722.1

chromosome 6: CM020723.1

chromosome 7: CM020724.1

chromosome 8: CM020725.1

chromosome 9: CM020726.1

chromosome 10: CM020727.1

chromosome 11: CM020728.1

chromosome 12: CM020729.1 g16 194

chromosome 1: CM007596.1

chromosome 2: CM007597.1

chromosome 3: CM007598.1

chromosome 4: CM007599.1

chromosome 5: CM007600.1

chromosome 6: CM007601.1

chromosome 7: CM007602.1

chromosome 8: CM007603.1

chromosome 9: CM007604.1

chromosome 10: CM007605.1

chromosome 11: CM007606.1

chromosome 12: CM007607.1 g17 206

chromosome 1: CM003897.1

chromosome 2: CM003898.1

chromosome 3: CM003899.1

chromosome 4: CM003900.1

chromosome 5: CM003901.1

chromosome 6: CM003902.1

chromosome 7: CM003903.1

chromosome 8: CM003904.1

chromosome 9: CM003905.1

chromosome 10: CM003906.1

chromosome 11: CM003907.1

chromosome 12: CM003908.1 g18 218

chromosome 1: CM003871.1

chromosome 2: CM003872.1

chromosome 3: CM003873.1

chromosome 4: CM003874.1

chromosome 5: CM003875.1

chromosome 6: CM003876.1

chromosome 7: CM003877.1

chromosome 8: CM003878.1

chromosome 9: CM003879.1

chromosome 10: CM003880.1

chromosome 11: CM003881.1

chromosome 12: CM003882.1 g19 230

chromosome 1: CM003885.1

chromosome 2: CM003886.1

chromosome 3: CM003887.1

chromosome 4: CM003888.1

chromosome 5: CM003889.1

chromosome 6: CM003890.1

chromosome 7: CM003891.1

chromosome 8: CM003892.1

chromosome 9: CM003893.1

chromosome 10: CM003894.1

chromosome 11: CM003895.1

chromosome 12: CM003896.1 g20 242

chromosome 1: CM000126.1

chromosome 2: CM000127.1

chromosome 3: CM000128.1

chromosome 4: CM000129.1

chromosome 5: CM000130.1

chromosome 6: CM000131.1

chromosome 7: CM000132.1

chromosome 8: CM000133.1

chromosome 9: CM000134.1

chromosome 10: CM000135.2

chromosome 11: CM000136.1

chromosome 12: CM000137.1 g21 254

chromosome 1: NC_029256.1

chromosome 2: NC_029257.1

chromosome 3: NC_029258.1

chromosome 4: NC_029259.1

chromosome 5: NC_029260.1

chromosome 6: NC_029261.1

chromosome 7: NC_029262.1

chromosome 8: NC_029263.1

chromosome 9: NC_029264.1

chromosome 10: NC_029265.1

chromosome 11: NC_029266.1

chromosome 12: NC_029267.1

chromosome 1: CM020633.1

chromosome 2: CM020634.1

chromosome 3: CM020635.1

chromosome 4: CM020636.1

chromosome 5: CM020637.1

chromosome 6: CM020638.1

chromosome 7: CM020639.1

chromosome 8: CM020640.1

chromosome 9: CM020641.1

chromosome 10: CM020642.1

chromosome 11: CM020643.1

chromosome 12: CM020644.1 g21 278

chromosome 1: CM012041.1

chromosome 2: CM012042.1

chromosome 3: CM012043.1

chromosome 4: CM012044.1

chromosome 5: CM012045.1

chromosome 6: CM012046.1

chromosome 7: CM012047.1

chromosome 8: CM012048.1

chromosome 9: CM012049.1

chromosome 10: CM012050.1

chromosome 11: CM012051.1

chromosome 12: CM012052.1 g22 290

chromosome 1: AP008207.2

chromosome 2: AP008208.2

chromosome 3: AP008209.2

chromosome 4: AP008210.2

chromosome 5: AP008211.2

chromosome 6: AP008212.2

chromosome 7: AP008213.2

chromosome 8: AP008214.2

chromosome 9: AP008215.2

chromosome 10: AP008216.2

chromosome 11: AP008217.2

chromosome 12: AP008218.2 g23 302

chromosome 1: CM020521.1

chromosome 2: CM020522.1

chromosome 3: CM020523.1

chromosome 4: CM020524.1

chromosome 5: CM020525.1

chromosome 6: CM020526.1

chromosome 7: CM020527.1

chromosome 8: CM020528.1

chromosome 9: CM020529.1

chromosome 10: CM020530.1

chromosome 11: CM020531.1

chromosome 12: CM020532.1 g24 314

chromosome 1: CM003076.1

chromosome 2: CM003077.1

chromosome 3: CM003078.1

chromosome 1: CM003064.1

chromosome 2: CM003065.1

chromosome 3: CM003066.1

chromosome 4: CM003067.1

chromosome 5: CM003068.1

chromosome 6: CM003069.1

chromosome 7: CM003070.1

chromosome 8: CM003071.1

chromosome 9: CM003072.1

chromosome 10: CM003073.1

chromosome 11: CM003074.1

chromosome 12: CM003075.1 g25 329

chromosome 1: CM000138.1

chromosome 2: CM000139.1

chromosome 3: CM000140.1

chromosome 4: CM000141.1

chromosome 5: CM000142.1

chromosome 6: CM000143.1

chromosome 7: CM000144.1

chromosome 8: CM000145.1

chromosome 9: CM000146.1

chromosome 10: CM000147.1

chromosome 11: CM000148.1

chromosome 12: CM000149.1 g26 341

chromosome 1: DG000053.1

chromosome 2: DG000054.1

chromosome 3: DG000055.1

chromosome 4: DG000056.1

chromosome 5: DG000057.1

chromosome 6: DG000058.1

chromosome 7: DG000059.1

chromosome 8: DG000060.1

chromosome 9: DG000061.1

chromosome 10: DG000062.1

chromosome 11: DG000063.1

chromosome 12: DG000064.1 g27 353

chromosome 1: DG000025.1

chromosome 2: DG000026.1

chromosome 3: DG000027.1

chromosome 4: DG000028.1

chromosome 5: DG000029.1

chromosome 6: DG000030.1

chromosome 7: DG000031.1

chromosome 8: DG000032.1

chromosome 9: DG000033.1

chromosome 10: DG000034.1

chromosome 11: DG000035.1

chromosome 12: DG000036.1 g28 365

chromosome 1: BA000010.8

chromosome 1: CM020694.1

chromosome 2: CM020695.1

chromosome 3: CM020696.1

chromosome 4: CM020697.1

chromosome 5: CM020698.1

chromosome 6: CM020699.1

chromosome 7: CM020700.1

chromosome 8: CM020701.1

chromosome 9: CM020702.1

chromosome 10: CM020703.1

chromosome 11: CM020704.1

chromosome 12: CM020705.1 g29 366

chromosome 1: CM020730.1

chromosome 2: CM020731.1

chromosome 3: CM020732.1

chromosome 4: CM020733.1

chromosome 5: CM020734.1

chromosome 6: CM020735.1

chromosome 7: CM020736.1

chromosome 8: CM020737.1

chromosome 9: CM020738.1

chromosome 10: CM020739.1

chromosome 11: CM020740.1

chromosome 12: CM020741.1 g30 390

chromosome 1: CM007627.2

chromosome 2: CM007628.2

chromosome 3: CM007629.2

chromosome 4: CM007630.2

chromosome 5: CM007631.2

chromosome 6: CM007632.2

chromosome 7: CM007633.2

chromosome 8: CM007634.2

chromosome 9: CM007635.2

chromosome 10: CM007636.2

chromosome 11: CM007637.2

chromosome 12: CM007638.2 g31 402

chromosome 1: CM020706.1

chromosome 2: CM020707.1

chromosome 3: CM020708.1

chromosome 4: CM020709.1

chromosome 5: CM020710.1

chromosome 6: CM020711.1

chromosome 7: CM020712.1

chromosome 8: CM020713.1

chromosome 9: CM020714.1

chromosome 10: CM020715.1

chromosome 11: CM020716.1

chromosome 12: CM020717.1 g32 414

chromosome 1: CM020742.1

chromosome 2: CM020743.1

chromosome 3: CM020744.1

chromosome 4: CM020745.1

chromosome 5: CM020746.1

chromosome 6: CM020747.1

chromosome 7: CM020748.1

chromosome 8: CM020749.1

chromosome 9: CM020750.1

chromosome 10: CM020751.1

chromosome 11: CM020752.1

chromosome 12: CM020753.1 g33 426




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