The Galaxy project aims to make bioinformatics tools accessible through the web, and allows you to experiment with parameter settings and create sophisticated analysis workflows easily. http://main.g2.bx.psu.edu/ Goecks, J, Nekrutenko, A, Taylor, J and The Galaxy Team. Galaxy: a comprehens ...
There are several reports on cloning genes in plant using QTL or GWAS methods. In the following paper by Prof. Han, NGS wasused to genotype the RILs(recombinant inbred lines). Then QTL method wasapplied to map the key loci. As the sequences only cover a part of genome, so ...
With the help of high throughput NGS technologies, It is very convenient to clone genes using strategies similar to map cloning. This is a example in Arabidopsis, which is very simple without much statistics analysis. (I will introduce some complex analysis recently.) Identification of MI ...
Useful softwares used in GWA studies. http://www.stats.ox.ac.uk/~marchini/software/gwas/gwas.html The software included are listed bellow IMPUTE a program for genotype imputation in genome-wide association studies and fine-ma ...