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第一作者:Haruki Nishio
第一单位:京都大学
通讯作者:Hiroshi Kudoh
Abstract
背景回顾:Diel and seasonal oscillations are two major environmental changes in nature.
提出问题:While organisms cope with the former by the well-characterized mechanism of the circadian clock, there is limited information on the molecular mechanisms underlying long-term responses to the latter. 研究对象:Histone H3 lysine 27 trimethylation (H3K27me3), a repressive histone modification, imparts stability and plasticity to gene regulation during developmental transitions. 主要研究:Here we studied the seasonal and diel dynamics of H3K27me3 at the genome-wide level in a natural population of perennial Arabidopsis halleri and compared these dynamics with those of histone H3 lysine 4 trimethylation (H3K4me3), an active histone modification. 结果:Chromatin immunoprecipitation sequencing revealed that H3K27me3 exhibits seasonal plasticity and diel stability. Furthermore, we found that the seasonal H3K27me3 oscillation is delayed in phase relative to the H3K4me3 oscillation 结论:Our findings suggest that H3K27me3 monitors past transcriptional activity to create long-term gene expression trends during organismal responses over weeks in natural fluctuating environments.
摘 要
昼夜和季节性节律是自然界两种最主要的环境变化。对于前者,我们知道生物一般通过一个叫做生物钟的机制来适应所处环境的昼夜节律,但是对于后者的长期响应分子调控机制还不是很清楚。组蛋白H3赖氨酸27三甲基化H3K27me3是一类抑制性的组蛋白修饰,在生物发育阶段转变过程中赋予基因调控以稳定性和可塑性。本文中,作者研究了多年生草本鼠耳芥(Arabidopsis halleri)全基因组范围上昼夜与季节性的H3K4me3动态变化,并与一类激活性组蛋白修饰即H3K4me3进行了比较。染色质免疫沉淀测序分析显示H3K27me3具有季节性的稳定性和昼夜性的可塑性。此外,作者还发现季节性的H3K27me3震荡相比于H3K4me3震荡存在相位延迟,尤其是与环境记忆相关的基因。本文的研究揭示了在生物响应自然动态环境数个星期后,H3K27me3通过控制过去的转录活性来创造长期的基因表达趋势。
p.s. 相对于生物钟控制的昼夜节律在植物中研究得已经很多了,但是植物对于季节性的环境变化是如何响应的这一块研究得还比较少,去年该通讯也发表了一篇NP,对鼠耳芥连续两年每周取样,同时在四个分至点连续两天每两个小时取样,研究了鼠耳芥叶片转录组的季节性响应,详情见链接:Nature Plants:植物适应自然环境季节性改变的转录组动态变化。
通讯作者
**Hiroshi Kudoh** 研究方向: 植物适应环境和多样化的生态过程。
doi: 10.1038/s41467-020-17874-2
Journal: Nature Plants
Published date: Augus 31, 2020
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