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第一作者:Martinus Schneijderberg
第一单位:瓦赫宁根大学
通讯作者:Ton Bisseling
Abstract
背景回顾:As a model for genetic studies, Arabidopsis thaliana (Arabidopsis) offers great potential to unravel plant genome-related mechanisms that shape the root microbiome.
提出问题:However, the fugitive life history of this species might have evolved at the expense of investing in capacity to steer an extensive rhizosphere effect. 主要研究:To determine whether the rhizosphere effect of Arabidopsis is different from other plant species that have a less fugitive life history, we compared the root microbiome of Arabidopsis to eight other, later succession plant species from the same habitat. 研究内容:The study included molecular analysis of soil, rhizosphere, and endorhizosphere microbiome both from the field and from a laboratory experiment. 根际效应-细菌:Molecular analysis revealed that the rhizosphere effect (as quantified by the number of enriched and depleted bacterial taxa) was ~35% lower than the average of the other eight species. 根际效应-微生物:Nevertheless, there are numerous microbial taxa differentially abundant between soil and rhizosphere, and they represent for a large part the rhizosphere effects of the other plants. 根际效应-真菌:In the case of fungal taxa, the number of differentially abundant taxa in the Arabidopsis rhizosphere is 10% of the other species’ average. 根际效应-内根际:In the plant endorhizosphere, which is generally more selective, the rhizosphere effect of Arabidopsis is comparable to other species, both for bacterial and fungal taxa. 结论:Taken together, our data imply that the rhizosphere effect of the Arabidopsis is smaller in the rhizosphere, but equal in the endorhizosphere when compared to plant species with a less fugitive life history.
摘 要
作为遗传研究的模式植物,拟南芥为研究影响植物根部微生物组的基因组相关机制提供了无限可能。然而,拟南芥短暂的生活史可能牺牲了其主宰根际效应的能力。为了研究拟南芥的根际效应是否区别于其它生活史更长的植物物种,作者比较了拟南芥根部微生物组与其它来自同一栖息地的8个在拟南芥死亡之后仍继续生长的植物物种。本研究包括了大田和实验室条件下土壤、根际以及内根际的微生物组鉴定。作者通过富集和缺失的细菌种类来定量根际效应,分子分析显示拟南芥的根际效应相比于其它8种植物低了约35%。然而,在土壤和根际之间存在大量差异富集的微生物种类,其在很大程度上代表了其它植物的根际效应。就真菌种类而言,拟南芥根际差异富集的类群数量仅为其它物种平均值的10%。在植物的内根际中,往往存在更强的选择,其中无论是从细菌层面还是真菌层面,拟南芥的根际效应与其它植物的相当。综上,本文的研究暗示拟南芥的根际效应在根际环境中更小,但是在内根际环境中与其它具有更长生活史的植物相当。
通讯作者
**Ton Bisseling** 个人简介: 1975年,拉德堡德大学,学士; 1980年,瓦赫宁根大学,博士。 研究方向: 根瘤菌共生演化。
doi: 10.1038/s41396-020-0695-2
Journal: The ISME Journal
Published date: May 28, 2020
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