Some recent posts reminded me that it might be useful for us to review the options for converting between genome coordinate systems. This comes up in several contexts. Probably the most common is that you have some coordinates for a particular version of a reference genome and you w ...
Abstract The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and epigenetic levels. The resulting rich data provide a major opportunity to develop an integrated picture of commonalities, ...