|||
0 Collect description information, prepare read files.
Run md5sum (Linux) to get the md5 numbers of read files
1 Create BioProject
Go to: http://www.ncbi.nlm.nih.gov/books/NBK47529/
"Steps for SRA Submission"-->Create a BioProject for this research
click the link of BioProject .
On the new page, clike "New submission".
2 Create BioSample
Go to: http://www.ncbi.nlm.nih.gov/books/NBK47529/
"Steps for SRA Submission"-->Create a BioSample submission for your biological sample(s)
click the link of BioSample .
On the new page, click "Download batch template" next to "New submission".
Edit the file to inlcude the information of your samples.
clike "New submission".
Check the submitter information, and select "multiple samples"
Load the batch file describing your samples.
Make necessary modification according to information of error detection.
You need to wait for hours to get offical accessions.
(PRJNAxxxxxx for BioProject and SAMNxxxx for BioSample)
3 New Experiment
Go to:
http://www.ncbi.nlm.nih.gov/Traces/sra_sub/sub.cgi
Click the project you want to add Experiment
Click "New Experiment" in the new page.
(You could get the same page by clickin these links).
(SRA -> Submit->Submission->New Experiment)
4 New run
Click "New run" in the SRA project page.
Get the password
Put files onto SRA sever.
cd datadirectoryonlocalsever
ftp -i ftp-private.ncbi.nih.gov
Login: sra
Password: 03o4!srRy! (you need new one)
(ftp -i : -i was used suppress confirmation)
mkdir PRJNA247388
cd PRJNA247388
mput *.gz
mput *.fastq
5 Link the files in Runs.
If you have more than 25 BioSamples, send an email to SRA.
You also need to transfer the data using the command listed earlier.
http://www.ncbi.nlm.nih.gov/books/NBK47529/
Archiver|手机版|科学网 ( 京ICP备07017567号-12 )
GMT+8, 2024-6-13 15:28
Powered by ScienceNet.cn
Copyright © 2007- 中国科学报社