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蛋白酶体抑制剂治疗多发性骨髓瘤研究的基因知识发现

已有 3435 次阅读 2010-12-29 14:07 |个人分类:知识发现|系统分类:论文交流| 基因, 治疗, 知识发现, 多发性骨髓瘤, 蛋白酶体抑制剂

http://arrowsmith.psych.uic.edu/cgi-bin/arrowsmith_uic/edit_b.cgi

 

Start A-Literature C-Literature B-list Filter Literature
  A-query: multiple myeloma and therapy
C-query: proteasome inhibitor
The B-list contains title words and phrases (terms) that appeared in both the A and the C literature. 425 articles appeared in both literatures and were not included in the process of computing the B-list but can be viewed here. The results of this search are saved under id # 3064 and can be accessed from the start page after you leave this session. There are 641 terms on the current B-list (329 are predicted to be relevant), which is shown ranked according to predicted relevance. The list can be further trimmed down using the filters listed in the left margin.

To assess whether there appears to be a biologically significant relationship between the AB and BC literatures for specific B-terms, please select one or more B-terms and then click the button to view the corresponding AB and BC literatures. Use Ctrl to select multiple B-terms.

 

job id # 3064 started Wed Dec 29 01:41:39 2010
Max_citations: 50000
Stoplist: /var/www/html/arrowsmith_uic/data/stopwords_pubmed
Ngram_max: 3
3064 Search ARROWSMITH A
A_query_raw: multiple myeloma and therapy Wed Dec 29 01:42:25 2010

A query = multiple myeloma and therapy started Wed Dec 29 01:42:26 2010
A query resulted in 13773 titles
3064 Search ARROWSMITH C
C_query_raw: proteasome inhibitor Wed Dec 29 01:42:39 2010

C: proteasome inhibitor 5177

A: pubmed_query_A 13773

AC: ( multiple myeloma and therapy ) AND ( proteasome inhibitor ) 425

C query = proteasome inhibitor started Wed Dec 29 01:42:40 2010
C query resulted in 5177 titles
A AND C query resulted in 425 titles
6169 B-terms ready on Wed Dec 29 01:44:12 2010

Sem_filter:
Genes & Molecular Sequences, and Gene & Protein Names
641 B-terms left after filter executed Wed Dec 29 01:50:28 2010

641 B-terms left after filter executed Wed Dec 29 01:50:31 2010

641 B-terms left after filter executed Wed Dec 29 01:50:34 2010

B-list on Wed Dec 29 01:51:43 2010
1 p27kip1
2 rankl
3 jak stat
4 jnk
5 wnt
6 mdm2
7 akt
8 vegf
9 caspase-8
10 stat1
11 apo2l
12 mtor
13 stat3
14 p38 mapk
15 beta catenin
16 caspase-3
17 ppargamma
18 caspase
19 gp130
20 toll receptor
21 cyclin dependent kinase
22 cox-2
23 pi3k
24 cd40 ligand
25 cd20
26 pten
27 survivin
28 bcl xl
29 mcl-1
30 jak2
31 kip1
32 erk1
33 c jun
34 phosphatidylinositol 3-kinase
35 ikappab
36 map kinase
37 cd40
38 mek
39 bcr abl
40 cyclin d1
41 cd52
42 jak
43 cd95
44 bax
45 cxcr4
46 signal regulated kinase
47 ny eso-1
48 waf1
49 abcg2
50 bcl-2
51 hdm2
52 p38
53 xiap
54 nf kappab
55 bcr
56 topoisomerase i
57 shp-1
58 socs3
59 jak1
60 c jun n
61 bcl
62 topoisomerase
63 mek1
64 cd34
65 cd1d
66 skp2
67 aurora a
68 histone deacetylase
69 il-6
70 cd28
71 endostatin
72 p53 gene
73 hepatocyte growth factor
74 hdac
75 c myc
76 psmb5
77 ubiquitin
78 p27
79 cyp2c8
80 abl
81 blys
82 transcription factor
83 cll
84 mage
85 hsp90
86 cdk2
87 telomerase reverse transcriptase
88 cdk6
89 glycogen synthase
90 smac
91 hsp70
92 bim
93 cd86
94 chk1
95 c jun nh2-terminal
96 fasl
97 erk
98 glucocorticoid receptor
99 apaf-1
100 ki-67
101 tyrosine kinase
102 p glycoprotein
103 cyclin
104 icam-1
105 k ras
106 nf kappa b
107 nqo1
108 interleukin
109 receptor tyrosine kinase
110 her-2
111 cannabinoid receptor
112 aml
113 egfr
114 saha
115 th1
116 her-2 neu
117 pkc
118 aurora b
119 janus kinase
120 jun
121 her-2 neu overexpression
122 activation c jun
123 pthrp
124 tp53
125 ikk
126 ifn alpha
127 statin
128 ck2
129 tumor suppressor
130 p21
131 genome wide
132 cytokine production
133 tnf alpha
134 20s
135 myc
136 gsk3beta
137 c met
138 cd8
139 rhoa
140 ctl
141 her2
142 cd30
143 matrix metalloproteinase
144 p53
145 autophagy
146 gene multiple myeloma
147 ifn
148 hmg coa reductase
149 chemokine
150 p65
151 ctla-4
152 interferon alpha
153 ampk
154 transgene expression
155 trail
156 promyelocytic leukemia
157 erythropoietin
158 cdna
159 stat
160 g2
161 dr5
162 heat shock protein
163 tnf
164 g1
165 fas
166 fas ligand
167 fibroblast growth factor
168 cytokine
169 hnrnp
170 bak
171 p53 tumor suppressor
172 tyrosine phosphatase
173 transferrin receptor
174 perforin
175 toll
176 bik
177 transgene expression human
178 p gp
179 sirt1
180 protein kinase c
181 bcl x
182 receptor kinase
183 nf
184 tumor suppressor gene
185 cd16
186 pcna
187 repressor
188 estrogen receptor
189 egf
190 tumor necrosis factor
191 notch
192 synergistic cytotoxicity
193 thrombomodulin
194 protein kinase
195 p16
196 leptin
197 programmed cell death
198 dna methyltransferase
199 p selectin
200 pu
201 crm1
202 tau
203 iap
204 ccr5
205 lfa-1
206 mhc
207 ranbp2
208 smad
209 interferon gamma
210 erythropoietin receptor
211 gsk-3beta
212 adeno
213 scid
214 q11
215 fas l
216 igf i
217 gene promoter
218 etr2
219 rac1
220 bortezomib synergistic
221 src
222 cystatin
223 major vault protein
224 death associated protein
225 protein tyrosine kinase
226 timp-1
227 activin
228 ns3
229 insulin receptor
230 igf
231 ifn gamma
232 d1
233 her2 neu
234 proliferating cell nuclear
235 ornithine decarboxylase
236 paget disease bone
237 cd4
238 gene expressed
239 prostate cancer
240 renal failure
241 microrna
242 activating transcription factor
243 radiation induced apoptosis
244 inflammatory bowel disease
245 neu
246 hyperlipidemia
247 pituitary tumor transforming
248 alpha2b
249 synergistic cytotoxic
250 thrombopoietin
251 histone
252 ire1alpha
253 cyclin d3
254 caveolin-1
255 killer
256 decorin
257 gene transfer
258 rna polymerase
259 igf-1
260 hsp27
261 mip-1beta
262 fc
263 endoplasmic reticulum
264 tnfr
265 protein tyrosine phosphatase
266 abcb1
267 transgene
268 intronic
269 pacap
270 cadherin
271 epidermal growth factor
272 glioma
273 class i
274 motor neuron disease
275 nk
276 a2a
277 kappa
278 rna binding protein
279 l1
280 il-12
281 vitamin d receptor
282 retinoblastoma
283 inducible
284 janus
285 er
286 opg
287 il-4
288 cpg
289 hla
290 il-1
291 m2
292 interferon
293 wnt3a
294 cytochrome p450
295 factor receptor egfr
296 protease
297 constitutive
298 atm
299 isoform
300 opioid receptor
301 oncogene
302 snp
303 integrin
304 ig
305 ras
306 oncogene expression
307 tumor transforming gene
308 enhancer
309 flt3
310 proteinase
311 kinase
312 breast cancer
313 p11
314 amino acid transporter
315 ran
316 insulin growth factor
317 p19
318 tubulin
319 fibronectin
320 mds
321 histidine decarboxylase
322 2b
323 protein c
324 fatty acid synthase
325 major histocompatibility complex
326 noxa
327 ligand
328 m d
329 transporter

http://arrowsmith.psych.uic.edu/cgi-bin/arrowsmith_uic/show_sentences.cgi

p27 Kip1蛋白是细胞周期负性调节物,抑制细胞增殖,阻断细胞生长于G1期。p27基因改变在许多人类恶性肿瘤中属罕见事件,但在良、恶性肿瘤中却广泛存在p27表达异常,提示一种翻译或翻译后的水平调控机制。

Start A-Literature C-Literature B-list Filter Literature

AB literature

 

B-term

 

BC literature

 

multiple myeloma and therapy ... p27kip1 proteasome inhibitor
1: Amplification and overexpression of CKS1B at chromosome band 1q21 is associated with reduced levels of p27Kip1 and an aggressive clinical course in multiple myeloma. 2005
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2: Low p27Kip1 expression is an independent adverse prognostic factor in patients with multiple myeloma. 2003
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1: Tumor suppressor p27Kip1 undergoes endolysosomal degradation through its interaction with sorting nexin 6. 2010
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2: Chemical genetics approach to restoring p27Kip1 reveals novel compounds with antiproliferative activity in prostate cancer cells. 2010
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3: USP19 deubiquitinating enzyme supports cell proliferation by stabilizing KPC1, a ubiquitin ligase for p27Kip1. 2009
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4: Histidine triad nucleotide-binding protein 1 up-regulates cellular levels of p27KIP1 by targeting ScfSKP2 ubiquitin ligase and Src. 2009
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5: TGFbeta prevents proteasomal degradation of the cyclin-dependent kinase inhibitor p27kip1 for cell cycle arrest. 2009
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6: Phosphorylation of p27Kip1 by Epstein-Barr virus protein kinase induces its degradation through SCFSkp2 ubiquitin ligase actions during viral lytic replication. 2009
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7: Overexpression of adenovirus-mediated p27kip1 lacking the Jab1-binding region enhances cytotoxicity and inhibits xenografted human cholangiocarcinoma growth. 2009
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8: Proteasome inhibitor MG-132 mediated expression of p27Kip1 via S-phase kinase protein 2 degradation induces cell cycle coupled apoptosis in primary effusion lymphoma cells. 2009
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9: Bortezomib-mediated expression of p27Kip1 through S-phase kinase protein 2 degradation in epithelial ovarian cancer. 2009
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10: Bortezomib (Velcade) induces p27Kip1 expression through S-phase kinase protein 2 degradation in colorectal cancer. 2008
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11: Pim kinases promote cell cycle progression by phosphorylating and down-regulating p27Kip1 at the transcriptional and posttranscriptional levels. 2008
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12: EGCG stabilizes p27kip1 in E2-stimulated MCF-7 cells through down-regulation of the Skp2 protein. 2008
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13: MG-132 inhibits telomerase activity, induces apoptosis and G(1) arrest associated with upregulated p27kip1 expression and downregulated survivin expression in gastric carcinoma cells. 2008
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14: Expression of p27kip1 and Skp2 in the adult spinal cord following sciatic nerve injury. 2007
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15: Hepatitis B virus pre-S2 mutant surface antigen induces degradation of cyclin-dependent kinase inhibitor p27Kip1 through c-Jun activation domain-binding protein 1. 2007
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16: Pirh2 promotes ubiquitin-dependent degradation of the cyclin-dependent kinase inhibitor p27Kip1. 2007
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17: p27kip1 overexpression promotes paclitaxel-induced apoptosis in pRb-defective SaOs-2 cells. 2006
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18: HSP27 favors ubiquitination and proteasomal degradation of p27Kip1 and helps S-phase re-entry in stressed cells. 2006
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19: Cellular mechanism through which parathyroid hormone-related protein induces proliferation in arterial smooth muscle cells: definition of an arterial smooth muscle PTHrP/p27kip1 pathway. 2006
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20: Expression of the ubiquitin ligase subunit cyclin kinase subunit 1 and its relationship to S-phase kinase protein 2 and p27Kip1 in prostate cancer. 2006
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21: HER2-targeting antibodies modulate the cyclin-dependent kinase inhibitor p27Kip1 via multiple signaling pathways. 2005
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22: Retinoic acid stabilizes p27Kip1 in EBV-immortalized lymphoblastoid B cell lines through enhanced proteasome-dependent degradation of the p45Skp2 and Cks1 proteins. 2005
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23: Ciglitazone-induced cellular anti-proliferation increases p27kip1 protein levels through both increased transcriptional activity and inhibition of proteasome degradation. 2005
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24: BCR-ABL induces the expression of Skp2 through the PI3K pathway to promote p27Kip1 degradation and proliferation of chronic myelogenous leukemia cells. 2005
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25: Hes1 directly controls cell proliferation through the transcriptional repression of p27Kip1. 2005
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26: Inducible expression of a degradation-resistant form of p27Kip1 causes growth arrest and apoptosis in breast cancer cells. 2005
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27: Growth arrest by troglitazone is mediated by p27Kip1 accumulation, which results from dual inhibition of proteasome activity and Skp2 expression in human hepatocellular carcinoma cells. 2004
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28: Induction of G1 arrest and apoptosis in human jurkat T cells by pentagalloylglucose through inhibiting proteasome activity and elevating p27Kip1, p21Cip1/WAF1, and Bax proteins. 2004
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29: The prognostic and therapeutic relevance of p27kip1 in Ewing's family tumors. 2004
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30: Adenovirus expressing mutant p27kip1 enhanced apoptosis against cholangiocarcinoma than adenovirus-p27kip1 wild type. 2004
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31: P27kip1 regulates the apoptotic response of gastric epithelial cells to Helicobacter pylori. 2004
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32: Regulation of p27Kip1 protein levels contributes to mitogenic effects of the RET/PTC kinase in thyroid carcinoma cells. 2004
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33: Facilitation of proteasomal degradation of p27Kip1 by N-terminal cleavage and their sequence requirements. 2004
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34: NPM/ALK downregulates p27Kip1 in a PI-3K-dependent manner. 2004
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35: PAX3-FKHR transformation increases 26 S proteasome-dependent degradation of p27Kip1, a potential role for elevated Skp2 expression. 2003
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36: The role of cyclin-dependent kinase inhibitor p27Kip1 in anti-HER2 antibody-induced G1 cell cycle arrest and tumor growth inhibition. 2003
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37: Phosphorylation of threonine 10 on CKBBP1/SAG/ROC2/Rbx2 by protein kinase CKII promotes the degradation of IkappaBalpha and p27Kip1. 2003
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38: Estrogens down-regulate p27Kip1 in breast cancer cells through Skp2 and through nuclear export mediated by the ERK pathway. 2003
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39: The role of p27Kip1 in proteasome inhibitor induced apoptosis. 2003
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40: P27Kip1 and p21Cip1 are not required for the formation of active D cyclin-cdk4 complexes. 2003
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41: Cell shape change precedes staurosporine-induced stabilization and accumulation of p27kip1. 2002
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42: Cloning and functional expression of a degradation-resistant novel isoform of p27Kip1. 2001
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43: IFNalpha 2b induces apoptosis and proteasome-mediated degradation of p27Kip1 in a human lung cancer cell line. 2001
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44: CEP1612, a dipeptidyl proteasome inhibitor, induces p21WAF1 and p27KIP1 expression and apoptosis and inhibits the growth of the human lung adenocarcinoma A-549 in nude mice. 2001
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45: Regulation of the cell cycle at the G1-S transition by proteolysis of cyclin E and p27Kip1. 2001
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46: The p42/p44 mitogen-activated protein kinase activation triggers p27Kip1 degradation independently of CDK2/cyclin E in NIH 3T3 cells. 2001
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47: A mouse knock-in model exposes sequential proteolytic pathways that regulate p27Kip1 in G1 and S phase. 2001
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48: Dynamic changes in p27kip1 variant expression in activated lymphocytes. 2001
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49: Regulation of p27KIP1 in Epstein-Barr virus-immortalized lymphoblastoid cell lines involves non-apoptotic caspase cleavage. 2001
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50: p27Kip1 accumulation is associated with retinoic-induced neuroblastoma differentiation: evidence of a decreased proteasome-dependent degradation. 2000
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51: p27Kip1 accumulation by inhibition of proteasome function induces apoptosis in oral squamous cell carcinoma cells. 2000
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52: A Nedd8 conjugation pathway is essential for proteolytic targeting of p27Kip1 by ubiquitination. 2000
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53: Differentiation-associated expression and intracellular localization of cyclin-dependent kinase inhibitor p27KIP1 and c-Jun co-activator JAB1 in neuroblastoma. 2000
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54: BCR/ABL regulates expression of the cyclin-dependent kinase inhibitor p27Kip1 through the phosphatidylinositol 3-Kinase/AKT pathway. 2000
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55: p27KIP1: androgen regulation and prognostic significance in prostate cancer. 2000
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56: p27kip1: a multifunctional cyclin-dependent kinase inhibitor with prognostic significance in human cancers. 1999
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57: Degradation of the cyclin-dependent-kinase inhibitor p27Kip1 is instigated by Jab1. 1999
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58: Reduced expression of p27Kip1 protein is associated with poor clinical outcome of breast cancer patients treated with systemic chemotherapy and is linked to cell proliferation and differentiation. 1999
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59: Reduced expression of cyclin-dependent kinase inhibitor p27Kip1 is an indicator of malignant behavior in oral squamous cell carcinoma. 1998
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