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微生物催化和转化在线资源

已有 7172 次阅读 2008-5-1 15:02 |个人分类:催化人物机构

微生物催化和转化在线资源

微生物催化和转化在线资源总结为以下几个部分，可以作为我们构建微生物催化与转化数据库的信息来源。

详细内容如下

1、基因组返回

EMBL - EMBL Nucleotide sequence db (EBI) 欧洲分子生物学实验室序列数据库
Genbank - GenBank Nucleotide Sequence db (NCBI) 美国国家生物技术信息中心
DDBJ - DNA Data Bank of Japan 日本 DNA 序列中心

2、蛋白质组返回

Swiss-Prot - Swiss-Prot annotated protein sequence db 瑞士蛋白质注释数据库
InterPro - Integrated Resources of Proteins Domains and Functional Sites 蛋白质 Donain 和功能资源库
PROSITE - PROSITE dictionary of protein sites and patterns 蛋白质 patterns 字典库

BIND - Biomolecular Interaction Network db 生物大分子相互作用网络数据库
DIP - Db of Interacting Proteins 蛋白质相互作用数据库

BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy 蛋白质、多肽和核酸 NMR 光谱数据库
WORLD-2DPAGE - A complete index of 2D-PAGE db and servers 欧洲蛋白质专家系统的 2-D 凝胶图谱数据库
Phoretix links - Phoretix page of links to 2D gel db Phoretix 的 2D- 凝胶图谱数据库
PDB - Protein Data Bank 生物大分子晶体结构数据库

3、微生物基因组返回

WDCM - World Data Center for Microorganisms 世界微生物数据中心

Microbial Genome Reference sequences and resources in NCBI NCBI 微生物全基因组数据库
List of Bacterial Names with Standing in Nomenclature
CMR - TIGR Comprehensive Microbial Ressource 基因组研究所 (TIGR) 的简明微生物基因组资源
GIB - Genome information broker for Microbial genomes 日本的基因组中心

HOBACGEN - Homologous Bacterial Genes db 同源细菌基因数据库
Comparison of the transport capabilities of bacterial genomes – 细菌跨膜转运数据库
BPGD - Bacterial polysaccharide gene db 细菌多糖相关基因数据库

EcoCyc - Encyclopedia of E.coli genes and metabolism 大肠杆菌代谢和基因数据库
GenProtEC - E.coli genome and proteome db
MBGD - Comparative Microbial Genome Database 比较微生物基因组数据库

4. 微生物物种收藏中心返回

American Type Culture Collection [ATCC]
National Collection of Yeast Cultures [NCYC] U.K.
German Culture Collection [DSMZ]
Centraalbureau voor Schimmelcultures [CBS] ND
International Mycological Intitute [IMI] U.K.
Colleción Espa?ola de Cultivos Tipo [CECT]
Belgium Microbial Collection
JCM Japan Collection of Microorganisms

Agricultural Research Service USDA

BCCM Belgian Co-ordinated Collections of Microorganisms

BGSC Bacillus Genetic Stock Center

BCC BIOTEC Culture Collection, Thailand

CABRI CABRI (Common Access to Biological Resources and Information) by EC

CBS Centraalbureau voor Schimmelcultures

CCAP The Culture Collection of Algae and Protozoa

CCUG University of Goteborg, Sweden (>38000 strains)

CGSC E.coli Genetic Stock Center

Developmental, Cell and Molecular Biology Group Duke University

DSMZ Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Fungal Genetics at U. Texas Houston Medical School

MA (Real Jardin Botanico, Madrid) cryptogamic collections

HAMBI University of Helsinki, Finland

IEGM Institute of Ecology and Genetics of Microorganisms

IMI CABI Bioscience Genetic Resource Collection

INVAM The International Culture Collection of Arbuscular and VA Mycorrhizal Fungi

JFCC a catalogue of strains preserved in Japan Federation for Culture Collection

MGD Microbial Germplasm Database

Matsushima Mycological Memoirs No.8

Microbial Information Network of China

MICH University of Michigan Fungus Collection

MSDN Microbial Strain Data Network

MSDN Microbial Strain Data Network mirrored in Japan

Mycological Resources

NCCB 荷兰皇家艺术和科学学院培养中心

NCIMB

VKM All Russian Collection of Microorganisms

World Phytophthora Collection, University of California Riverside (US)

5、酶及化合物数据库返回

IUBMB Nomenclature 国际化学和分子生物学联合会命名
IUPAC Nomenclature 国际纯化学协会有机化学命名
IUPHAR Receptor Nomenclature 国际药学联合会受体命名
Gene Ontology 基因存在命名法

6. 代谢途径数据库返回

7、调控网络数据库返回

8、酶的稳定性和固定化资源返回

GeNet - Gene Networks Database

9、重要的 Biocatalysis & Biotransformations 研究机构返回

Argentina	Elizabeth Lewkowicz. University of Quilmes
Austria	Griengl group, Technical University of Graz Kulbe group, BOKU, Wien Faber group, University of Graz
Canada	Romas Kazlauskas, McGill University, Montreal http://pasteur.chem.mcgill.ca/rjkhome.html Mirek Cygler, Biotechnology Research Institute, Montreal http://www.bri.nrc.ca/pha_bio/msg/msg_en.htm Bryan Jones, University of Toronto http://www.chem.utoronto.ca/staff/JBJ
Denmark	Biocentrum
France	Biocatalysis group, CNRS, Marseille Biotechnology group, INSA, Toulouse Christian Guerin. University Montpellier II
Finland	Liisa Kanerva group, University of Turku [Return to Navigation table]
Grecce	Aristoteles Xenakis. Hellenic Research Foundation
Germany	Dr. Marion Ansorge-Schumacher. Technological University of Aachen Institute of Biotechnology, Jülich Institute of Technical Biochemistry, University of Stuttgart Uwe Bornscheuer group, University of Greifswald Reetz group, Max-Planck-Institut für Kohlenforschung Hummel group, University of Dusseldorf Dr.Martin Bertau, University of Dresden
Italy	Francesco Molinari. Faculty of Food Technology. University of Milan. Marco Terreni. Faculty of Pharmacy. University of Pavia Maria Pia Viola Magni. University of Perugia. Institute of Biocatalysis, CNR, Milano Giacomo Carrea, Sergio Riva Ist. Biocat. Ric. Mol. CNR Milano http://www.ico.mi.cnr.it/ Marina Lotti, Dept of Biotechnology and Biosciences, University Milano-Bicocca
Israel	Institute of Technology [Return to Navigation table]
The Netherlands	Dept of Biotechnology, Technical University, Delft
Portugal	Cabral group, Instituto Superior Tecnico, Lisboa
Spain	José Manuel Guisán. Instituto de Catalisis. CSIC. Madrid Francisco Valero. Departamento de Ingenieria Química . UAB Antonio Ballesteros. Instituto de catalisis. CSIC. Madri d Vicente Gotor. Facultad de Química. Universidad de Oviedo. Oviedo Departament de Química Inorgànica i Orgànica. Universitat Jaume I. Castellón José Vicente Sinisterra. Biotransformations Group UCM. Madrid
Scotland	Halling group, University of Strathclyde, Glasgow [Return to Navigation table]
Sweden	Biocatalysis group, Royal Institute of Technology, Stockholm Patrick Adlerkreutz Lund University, Sweden http://www.biotek.lu.se/bioorgan/Intro/index.htm Organic Chemistry, MidSweden University, Sundsvall Biocatalysis Group KTH
Switzerland	J.A. Robinson. University of Zurich Swiss Federal Institute of Technology
United Kingdom	Peter Halling, University of Strathclyde, UK. http://www.strath.ac.uk/Departments/Chemistry/staff/halling_dir Biotransformations Research Group, University of Strathclyde, Glasgow Lipase structure, University of York SM Roberts Group, University of Liverpool
Uruguay	Gustavo Seoane. University of the Republic Montevideo
USA	U.S. Navy Biocatalysis and Bioengineering Jonathan Dordick, University of Iowa, Iowa City, USA http://www.uiowa.edu/~biocat/ Alexander Klibanov, MIT, Cambridge, MA http://web.mit.edu/be/people/klibanov.ht m Chi-Huey Wong Group,Scripps Research Institute, La Jolla, USA http://www.scripps.edu/pub/wong-web/wong/wonggroup.html Arnold group, Caltech, Pasadena, CA Andreas Bommarius Group. Georgia Tech . The Richard A. Gross Research Group. Polytechnic University. New York.