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结构方程模型(SEM)-是科学,也是艺术!

已有 726 次阅读 2024-11-7 14:22 |系统分类:科研笔记

大师级数据分析,不仅模型设置和数据结构贴切合理,其结果呈现往往也颇具艺术性,反映了作者的审美境界。统计模型和制图的无缝对接和展示,会大大提升论文的清晰度和观赏性,让人观之如饮甘露,回味无穷。

    最近看到NEE上今年发表的一项研究,分析了温度和生物多样性对鸟类和鱼类群落稳定的不同影响。该研究分别在鸟类和鱼类中构建了甚为复杂的混合模型piecewise结构方程模型(SEM),对比了两种群落中作用路径的差别。其SEM结果描述和制图,虽然复杂,但非常清晰、明了,颇具艺术性!论文作者也提供了完整的数据和代码(下载地址:https://zenodo.org/records/12654292)非常值得学习、推荐!

SEM概念框架图:

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鸟类和鱼类中的实际作用路径:

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     尤其是是论文中对SEM相关参数结果意义的描述和说明,堪称样板级,比如对上图的描述:

a,b, Piecewise structural equation model showing the  direct and indirect effects of multiple abiotic and biotic drivers on  the stability of birds (Fisher’s C statistic from a two-sided test: C = 6.697, P = 0.35, d.f. = 6, n = 1,246) (a) and fish communities (Fisher’s C statistic from a two-sided test: C = 11.325, P = 0.079, d.f. = 6, n = 580) (b). In Fisher’s C statistics, a P value > 0.05 indicates a well-fitted model. Marginal r-square (r2m) values showing variance explained by the fixed effects and conditional r-square (r2c)  values showing variance explained by the entire model are provided  within the blue box related to the nearby variables. Solid black and red  lines represent significant (if P value < 0.05, a two-sided  test) positive and negative effects (standardized path coefficients are  rounded up to two decimal places), respectively, while dashed lines  indicate insignificant effects (if P value > 0.05, a two-sided  test), and yellow highlights represent paths hypothesized based on  statistical reason, not because of biological significance  (Supplementary Table 1 and Methods). The width of each solid arrow is proportional to the standardized path coefficients. c,  Path coefficients for both taxa are depicted as a bar chart, with an  asterisk sign (green for birds, blue for fish), if significant. Exact  values for path coefficients and associated P values are given in Supplementary Tables 2 and 3. The biotic and abiotic drivers in the x-axis text are shown in deep green and maroon, respectively.

文献来源:

Ghosh, S., B. Matthews, and O. L. Petchey. 2024. Temperature and biodiversity influence community stability differently in birds and fishes. Nature Ecology & Evolution 8:1835-1846.

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