基因组信息挖掘分享 http://blog.sciencenet.cn/u/hsm 基因组像无标点的天书,需要慢慢理解,慢慢加标点。

博文

TAIR中cdna,cds与seq的区别

已有 12182 次阅读 2010-8-18 21:41 |个人分类:未分类|系统分类:科研笔记


CLUSTAL W (1.83) multiple sequence alignment



cdna_AT1G51370.2      ATGGTGGGTGGCAAGAAGAAAACCAAGATATGTGACAAAGTGTCACATGAGGAAGATAGG
seq_AT1G51370.2       ATGGTGGGTGGCAAGAAGAAAACCAAGATATGTGACAAAGTGTCACATGAGGAAGATAGG
cds_AT1G51370.2       ATGGTGGGTGGCAAGAAGAAAACCAAGATATGTGACAAAGTGTCACATGAGGAAGATAGG
                      ************************************************************


cdna_AT1G51370.2      ATAAGCCAGTTACCGGAACCTTTGATATCTGAAATACTTTTTCATCTTTCTACCAAGGAC
seq_AT1G51370.2       ATAAGCCAGTTACCGGAACCTTTGATATCTGAAATACTTTTTCATCTTTCTACCAAGGAC
cds_AT1G51370.2       ATAAGCCAGTTACCGGAACCTTTGATATCTGAAATACTTTTTCATCTTTCTACCAAGGAC
                      ************************************************************


cdna_AT1G51370.2      TCTGTCAGAACAAGCGCTTTGTCTACCAAATGGAGATATCTTTGGCAATCGGTTCCTGGA
seq_AT1G51370.2       TCTGTCAGAACAAGCGCTTTGTCTACCAAATGGAGATATCTTTGGCAATCGGTTCCTGGA
cds_AT1G51370.2       TCTGTCAGAACAAGCGCTTTGTCTACCAAATGGAGATATCTTTGGCAATCGGTTCCTGGA
                      ************************************************************


cdna_AT1G51370.2      TTGGACTTAGACCCCTACGCATCCTCAAATACCAATACAATTGTGAGTTTTGTTGAAAGT
seq_AT1G51370.2       TTGGACTTAGACCCCTACGCATCCTCAAATACCAATACAATTGTGAGTTTTGTTGAAAGT
cds_AT1G51370.2       TTGGACTTAGACCCCTACGCATCCTCAAATACCAATACAATTGTGAGTTTTGTTGAAAGT
                      ************************************************************


cdna_AT1G51370.2      TTTTTTGATTCCCACAGGGATTCATGGATACGCAAACTCCGTTTAGATTTGGGTTATCAT
seq_AT1G51370.2       TTTTTTGATTCCCACAGGGATTCATGGATACGCAAACTCCGTTTAGATTTGGGTTATCAT
cds_AT1G51370.2       TTTTTTGATTCCCACAGGGATTCATGGATACGCAAACTCCGTTTAGATTTGGGTTATCAT
                      ************************************************************


cdna_AT1G51370.2      CATGATAAGTATGATCTCATGTCATGGATTGATGCTGCGACTACGCGTAGGATTCAGCAT
seq_AT1G51370.2       CATGATAAGTATGATCTCATGTCATGGATTGATGCTGCGACTACGCGTAGGATTCAGCAT
cds_AT1G51370.2       CATGATAAGTATGATCTCATGTCATGGATTGATGCTGCGACTACGCGTAGGATTCAGCAT
                      ************************************************************


cdna_AT1G51370.2      CTTGATGTTCATTGTTTTCACGATAATAAGATACCCTTGAGCATATATACATGCACGACG
seq_AT1G51370.2       CTTGATGTTCATTGTTTTCACGATAATAAGATACCCTTGAGCATATATACATGCACGACG
cds_AT1G51370.2       CTTGATGTTCATTGTTTTCACGATAATAAGATACCCTTGAGCATATATACATGCACGACG
                      ************************************************************


cdna_AT1G51370.2      TTGGTACACTTACGACTCCGTTGGGCTGTCTTGACTAATCCCGAGTTTGTTTCCTTACCT
seq_AT1G51370.2       TTGGTACACTTACGACTCCGTTGGGCTGTCTTGACTAATCCCGAGTTTGTTTCCTTACCT
cds_AT1G51370.2       TTGGTACACTTACGACTCCGTTGGGCTGTCTTGACTAATCCCGAGTTTGTTTCCTTACCT
                      ************************************************************


cdna_AT1G51370.2      TGTCTGAAGATCATGCATTTTGAAAATGTTAGCTATCCCAATGAGACCACGTTGCAGAAA
seq_AT1G51370.2       TGTCTGAAGATCATGCATTTTGAAAATGTTAGCTATCCCAATGAGACCACGTTGCAGAAA
cds_AT1G51370.2       TGTCTGAAGATCATGCATTTTGAAAATGTTAGCTATCCCAATGAGACCACGTTGCAGAAA
                      ************************************************************


cdna_AT1G51370.2      CTTATCTCAGGCTCTCCAGTTCTAGAAGAATTAATACTCTTCAGCACTATGTATCCTAAG
seq_AT1G51370.2       CTTATCTCAGGCTCTCCAGTTCTAGAAGAATTAATACTCTTCAGCACTATGTATCCTAAG
cds_AT1G51370.2       CTTATCTCAGGCTCTCCAGTTCTAGAAGAATTAATACTCTTCAGCACTATGTATCCTAAG
                      ************************************************************


cdna_AT1G51370.2      GGAAACGTTTTACAATTGCGCTCTGATACGCTAAAGAGACTCGATATCAATGAGTTTATT
seq_AT1G51370.2       GGAAACGTTTTACAATTGCGCTCTGATACGCTAAAGAGACTCGATATCAATGAGTTTATT
cds_AT1G51370.2       GGAAACGTTTTACAATTGCGCTCTGATACGCTAAAGAGACTCGATATCAATGAGTTTATT
                      ************************************************************


cdna_AT1G51370.2      GACGTTGTGATTTATGCACCTCTACTCCAGTGTCTGAGGGCTAAGATGTACTCAACAAAG
seq_AT1G51370.2       GACGTTGTGATTTATGCACCTCTACTCCAGTGTCTGAGGGCTAAGATGTACTCAACAAAG
cds_AT1G51370.2       GACGTTGTGATTTATGCACCTCTACTCCAGTGTCTGAGGGCTAAGATGTACTCAACAAAG
                      ************************************************************


cdna_AT1G51370.2      AACTTTCAGATCATCAGTTCGGGTTTCCCTGCCAAACTAGATATTGATTTCGTCAATACT
seq_AT1G51370.2       AACTTTCAGATCATCAGTTCGGGTTTCCCTGCCAAACTAGATATTGATTTCGTCAATACT
cds_AT1G51370.2       AACTTTCAGATCATCAGTTCGGGTTTCCCTGCCAAACTAGATATTGATTTCGTCAATACT
                      ************************************************************


cdna_AT1G51370.2      GGTGGGAGATACCAAAAAAAAAAAGTGATTGAAGATATCCTCATCGATATTTCGAGGGTC
seq_AT1G51370.2       GGTGGGAGATACCAAAAAAAAAAAGTGATTGAAGATATCCTCATCGATATTTCGAGGGTC
cds_AT1G51370.2       GGTGGGAGATACCAAAAAAAAAAAGTGATTGAAGATATCCTCATCGATATTTCGAGGGTC
                      ************************************************************


cdna_AT1G51370.2      AGGGATCTAGTTATTAGTAGTAATACTTGGAAGG--------------------------
seq_AT1G51370.2       AGGGATCTAGTTATTAGTAGTAATACTTGGAAGGTATACATCTTAACATTTGAGCATATT
cds_AT1G51370.2       AGGGATCTAGTTATTAGTAGTAATACTTGGAAGG--------------------------
                      **********************************                          


cdna_AT1G51370.2      ------------------------------------------------------------
seq_AT1G51370.2       TGTTTAAAAATATTCCTCCACAAAAGTTTCTCACCGTAACATTTTTTTGTTCACTTATGT
cds_AT1G51370.2       ------------------------------------------------------------
                                                                                  


cdna_AT1G51370.2      -------AATTCTTTCTATACTCAAAGTCAAGACCATTGCTCCAGTTTCGTTACATATCC
seq_AT1G51370.2       TACCAGGAATTCTTTCTATACTCAAAGTCAAGACCATTGCTCCAGTTTCGTTACATATCC
cds_AT1G51370.2       -------AATTCTTTCTATACTCAAAGTCAAGACCATTGCTCCAGTTTCGTTACATATCC
                             *****************************************************


cdna_AT1G51370.2      CATTTGAATGCTAGATTTTATATATCTGATCTTGAAATGTTGCCAACGCTTCTTGAGAGC
seq_AT1G51370.2       CATTTGAATGCTAGATTTTATATATCTGATCTTGAAATGTTGCCAACGCTTCTTGAGAGC
cds_AT1G51370.2       CATTTGAATGCTAGATTTTATATATCTGATCTTGAAATGTTGCCAACGCTTCTTGAGAGC
                      ************************************************************


cdna_AT1G51370.2      TGCCCAAAACTTGAATCTCTCATATTGGTAATGAGTAGCTTTAACCCTTCTTGAGAGCTC
seq_AT1G51370.2       TGCCCAAAACTTGAATCTCTCATATTGGTAATGAGTAGCTTTAACCCTTCTTGAGAGCTC
cds_AT1G51370.2       TGCCCAAAACTTGAATCTCTCATATTGGTAATGAGTAGCTTTAACCCTTCTTGA------
                      ******************************************************      


cdna_AT1G51370.2      CTATTTACACATATTGTTTGAGATAACCTCTTATATGTATCTCTCTACTCAATTTGTTTT
seq_AT1G51370.2       CTATTTACACATATTGTTTGAGATAACCTCTTATATGTATCTCTCTACTCAATTTGTTTT
cds_AT1G51370.2       ------------------------------------------------------------
                                                                                  


cdna_AT1G51370.2      CTTTTATTTAT
seq_AT1G51370.2       CTTTTATTTAT
cds_AT1G51370.2       -----------
                                 


cDNA包含除编码区外还有尾部序列,没有内含子


cds没有尾部序列和内含子


seq含有编码区,内含子和尾部序列






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