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Ensembl基因组+注释 | 物种速查 | 动物

已有 10339 次阅读 2017-12-20 10:07 |个人分类:物种速查|系统分类:科研笔记


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作者:小丫    来源:嘉因

同样算read counts,为什么公司跟师兄算的结果不一样?| Ensembl、UCSC、Refseq,该用哪个一文推荐用ensembl的gene model,哪些已经测序的动物有ensembl基因组注释呢?

列在这里,加上了中文名和汉语拼音,便于小伙伴儿们查找。

Species拉丁名汉语名拼音
HumanHomo sapiensRén
MouseMus musculus小鼠Xiǎoshǔ
ZebrafishDanio rerio斑马鱼bānmǎ yú
Algerian mouseMus spretus小家鼠Xiǎo jiā shǔ
AlpacaVicugna pacos羊驼yáng tuó
Amazon mollyPoecilia formosa亚马逊帆鳍鳉Yàmǎxùn fān qí jiāng
Anole lizardAnolis carolinensis安妮拉蜥蜴ānnī lā xīyì
ArmadilloDasypus novemcinctus犰狳qiú yú
Brazilian guinea pigCavia aperea巴西豚鼠bāxī túnshǔ
BushbabyOtolemur garnettii小耳大婴猴Xiǎo'ěr dà yīng hóu
C.intestinalisCiona intestinalis玻璃海鞘Bōlí hǎiqiào
C.savignyiCiona savignyi萨氏海鞘Sà shì hǎiqiào
Caenorhabditis elegansCaenorhabditis elegans秀丽隐杆线虫xiùlì yǐn gān xiànchóng
CatFelis catusmāo
Cave fishAstyanax mexicanus洞穴鱼dòngxué yú
ChickenGallus gallus
ChimpanzeePan troglodytes黑猩猩hēixīngxīng
Chinese hamster  CHOK1GSCricetulus griseus中国仓鼠CHOK1GSzhōngguó cāngshǔ CHOK1GS
Chinese hamster  CriGriCricetulus griseus中国仓鼠CriGrizhōngguó cāngshǔ CriGri
Chinese softshell turtlePelodiscus sinensis中国软壳龟zhōngguó ruǎn ké guī
CodGadus morhua鳕鱼xuěyú
CoelacanthLatimeria chalumnae腔棘鱼qiāng jí yú
CowBos taurusniú
Damara mole ratFukomys damarensis达马拉鼹鼠dá mǎ lā yǎn shǔ
DeguOctodon degus灌丛八齿鼠Guàn cóng bā chǐ shǔ
DogCanis lupus familiarisgǒu
DolphinTursiops truncatus海豚hǎitún
DuckAnas platyrhynchos
ElephantLoxodonta africanaxiàng
FerretMustela putorius furo蒙眼貂Méng yǎn diāo
FlycatcherFicedula albicollis白领姬鶲Báilǐng jī wēng
FruitflyDrosophila melanogaster果蝇guǒ yíng
FuguTakifugu rubripes红鳍东方鲀Hóng qí dōngfāng tún
GibbonNomascus leucogenys长臂猿chángbìyuán
Golden HamsterMesocricetus auratus金黄地鼠Jīnhuáng dì shǔ
GorillaGorilla gorilla gorilla大猩猩dà xīngxīng
Guinea PigCavia porcellus豚鼠túnshǔ
HedgehogErinaceus europaeus西欧刺猬Xī'ōu cìwèi
HorseEquus caballus
HyraxProcavia capensis蹄兔tí tù
Kangaroo ratDipodomys ordii袋鼠鼠dàishǔshǔ
LampreyPetromyzon marinus七鳃鳗qī sāi mán
Lesser Egyptian jerboaJaculus jaculus非洲跳鼠Fēizhōu tiào shǔ
Lesser hedgehog tenrecEchinops telfairi小马岛猬Xiǎo mǎ dǎo wèi
Long-tailed chinchillaChinchilla lanigera长尾龙猫cháng wěi lóng māo
MacaqueMacaca mulatta猕猴mí hóu
MarmosetCallithrix jacchusróng
MedakaOryzias latipes青鳉qīng jiāng
MegabatPteropus vampyrus狐蝠hú fú
MicrobatMyotis lucifugus莹鼠耳蝠Yíng shǔ ěr fú
Mouse 129S1/SvImJMus musculus小鼠129S1 / SvImJXiāoshǔ 129S1/ SvImJ
Mouse A/JMus musculus小鼠A / JXiāoshǔ A/ J
Mouse AKR/JMus musculus小鼠AKR / Jxiǎo shǔ AKR/ J
Mouse BALB/cJMus musculus小鼠BALB / cJXiāoshǔ BALB/ cJ
Mouse C3H/HeJMus musculus小鼠C3H / HeJXiāoshǔ C3H/ HeJ
Mouse C57BL/6NJMus musculus小鼠C57BL / 6NJxiǎo shǔ C57BL/ 6NJ
Mouse CAST/EiJMus musculus castaneus小鼠CAST / EiJXiāoshǔ CAST/ EiJ
Mouse CBA/JMus musculus小鼠CBA / Jxiǎo shǔ CBA/ J
Mouse DBA/2JMus musculus小鼠DBA / 2JXiāoshǔ DBA/ 2J
Mouse FVB/NJMus musculus小鼠FVB / NJxiǎo shǔ FVB/ NJ
Mouse LP/JMus musculus小鼠LP / JXiāoshǔ LP/ J
Mouse LemurMicrocebus murinus小鼠狐猴Xiāoshǔ hú hóu
Mouse NOD/ShiLtJMus musculus小鼠NOD / ShiLtJXiāoshǔ NOD/ ShiLtJ
Mouse NZO/HlLtJMus musculus小鼠NZO / HlLtJXiāoshǔ NZO/ HlLtJ
Mouse PWK/PhJMus musculus musculus小鼠PWK / PhJXiāoshǔ PWK/ PhJ
Mouse WSB/EiJMus musculus domesticus小鼠WSB / EiJXiāoshǔ WSB/ EiJ
Naked mole-rat  femaleHeterocephalus glaber裸鼹鼠luǒ yǎnshǔ
Naked mole-rat maleHeterocephalus glaber裸鼹鼠luǒ yǎnshǔ
Northern  American deer mousePeromyscus maniculatus bairdii北美鹿鹿běiměi lù lù
Olive baboonPapio anubis东非狒狒Dōngfēi fèifèi
OpossumMonodelphis domestica短尾负鼠Duǎn wěi fù shǔ
OrangutanPongo abelii苏门达腊猩猩Sū mén dá là xīngxīng
PandaAiluropoda melanoleuca熊猫xióngmāo
PigSus scrofa野猪Yězhū
PikaOchotona princeps鼠兔shǔ tù
PlatyfishXiphophorus maculatus新月鱼xīn yuè yú
PlatypusOrnithorhynchus anatinus鸭嘴兽yāzuǐshòu
Prairie voleMicrotus ochrogaster草原田鼠Cǎoyuán tiánshǔ
RabbitOryctolagus cuniculus家兔tùzǐ
RatRattus norvegicus褐家鼠Hè jiā shǔ
Ryukyu mouseMus caroli月鼠Yuè shǔ
Saccharomyces  cerevisiaeSaccharomyces cerevisiae酿酒酵母niàngjiǔ xiào mǔ
SheepOvis aries绵羊Miányáng
ShrewSorex araneus鼩鼱Qú jīng
Shrew mouseMus pahari锡金小鼠Xíjīn xiǎo shǔ
SlothCholoepus hoffmanni霍氏树懒Huò shì shù lǎn
Spotted garLepisosteus oculatus雀鳝Què shàn
SquirrelIctidomys tridecemlineatus松鼠sōngshǔ
SticklebackGasterosteus aculeatus棘鱼jí yú
TarsierCarlito syrichta眼镜猴yǎnjìng hóu
Tasmanian devilSarcophilus harrisii袋獾Dài huān
TetraodonTetraodon nigroviridis黑斑鲀Hēi bān tún
TilapiaOreochromis niloticus罗非鱼luó fēi yú
Tree ShrewTupaia belangeri树闙shù qǐ
TurkeyMeleagris gallopavo火鸡Huǒ jī
Upper Galilee mountains  blind mole ratNannospalax galili上加利利山瞎鼹鼠shàng jiā lì lì shān xiā yǎn shǔ
Vervet-AGMChlorocebus sabaeus绿猴Lǜ hóu
WallabyNotamacropus eugenii袋鼠dàishǔ
XenopusXenopus tropicalis非洲爪蟾fēizhōu zhǎo chán
Zebra FinchTaeniopygia guttata斑马雀bānmǎ què

用ensembl基因组的理由:

同样用Ensembl算TPM,结果还是不一样? | Ensembl的注意事项



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