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Ensembl基因组+注释 | 物种速查 | 动物
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作者：小丫 来源：嘉因
同样算read counts，为什么公司跟师兄算的结果不一样？| Ensembl、UCSC、Refseq，该用哪个一文推荐用ensembl的gene model，哪些已经测序的动物有ensembl基因组注释呢？
列在这里，加上了中文名和汉语拼音，便于小伙伴儿们查找。
| Species | 拉丁名 | 汉语名 | 拼音 |
| Human | Homo sapiens | 人 | Rén |
| Mouse | Mus musculus | 小鼠 | Xiǎoshǔ |
| Zebrafish | Danio rerio | 斑马鱼 | bānmǎ yú |
| Algerian mouse | Mus spretus | 小家鼠 | Xiǎo jiā shǔ |
| Alpaca | Vicugna pacos | 羊驼 | yáng tuó |
| Amazon molly | Poecilia formosa | 亚马逊帆鳍鳉 | Yàmǎxùn fān qí jiāng |
| Anole lizard | Anolis carolinensis | 安妮拉蜥蜴 | ānnī lā xīyì |
| Armadillo | Dasypus novemcinctus | 犰狳 | qiú yú |
| Brazilian guinea pig | Cavia aperea | 巴西豚鼠 | bāxī túnshǔ |
| Bushbaby | Otolemur garnettii | 小耳大婴猴 | Xiǎo'ěr dà yīng hóu |
| C.intestinalis | Ciona intestinalis | 玻璃海鞘 | Bōlí hǎiqiào |
| C.savignyi | Ciona savignyi | 萨氏海鞘 | Sà shì hǎiqiào |
| Caenorhabditis elegans | Caenorhabditis elegans | 秀丽隐杆线虫 | xiùlì yǐn gān xiànchóng |
| Cat | Felis catus | 猫 | māo |
| Cave fish | Astyanax mexicanus | 洞穴鱼 | dòngxué yú |
| Chicken | Gallus gallus | 鸡 | jī |
| Chimpanzee | Pan troglodytes | 黑猩猩 | hēixīngxīng |
| Chinese hamster CHOK1GS | Cricetulus griseus | 中国仓鼠CHOK1GS | zhōngguó cāngshǔ CHOK1GS |
| Chinese hamster CriGri | Cricetulus griseus | 中国仓鼠CriGri | zhōngguó cāngshǔ CriGri |
| Chinese softshell turtle | Pelodiscus sinensis | 中国软壳龟 | zhōngguó ruǎn ké guī |
| Cod | Gadus morhua | 鳕鱼 | xuěyú |
| Coelacanth | Latimeria chalumnae | 腔棘鱼 | qiāng jí yú |
| Cow | Bos taurus | 牛 | niú |
| Damara mole rat | Fukomys damarensis | 达马拉鼹鼠 | dá mǎ lā yǎn shǔ |
| Degu | Octodon degus | 灌丛八齿鼠 | Guàn cóng bā chǐ shǔ |
| Dog | Canis lupus familiaris | 狗 | gǒu |
| Dolphin | Tursiops truncatus | 海豚 | hǎitún |
| Duck | Anas platyrhynchos | 鸭 | yā |
| Elephant | Loxodonta africana | 象 | xiàng |
| Ferret | Mustela putorius furo | 蒙眼貂 | Méng yǎn diāo |
| Flycatcher | Ficedula albicollis | 白领姬鶲 | Báilǐng jī wēng |
| Fruitfly | Drosophila melanogaster | 果蝇 | guǒ yíng |
| Fugu | Takifugu rubripes | 红鳍东方鲀 | Hóng qí dōngfāng tún |
| Gibbon | Nomascus leucogenys | 长臂猿 | chángbìyuán |
| Golden Hamster | Mesocricetus auratus | 金黄地鼠 | Jīnhuáng dì shǔ |
| Gorilla | Gorilla gorilla gorilla | 大猩猩 | dà xīngxīng |
| Guinea Pig | Cavia porcellus | 豚鼠 | túnshǔ |
| Hedgehog | Erinaceus europaeus | 西欧刺猬 | Xī'ōu cìwèi |
| Horse | Equus caballus | 马 | mǎ |
| Hyrax | Procavia capensis | 蹄兔 | tí tù |
| Kangaroo rat | Dipodomys ordii | 袋鼠鼠 | dàishǔshǔ |
| Lamprey | Petromyzon marinus | 七鳃鳗 | qī sāi mán |
| Lesser Egyptian jerboa | Jaculus jaculus | 非洲跳鼠 | Fēizhōu tiào shǔ |
| Lesser hedgehog tenrec | Echinops telfairi | 小马岛猬 | Xiǎo mǎ dǎo wèi |
| Long-tailed chinchilla | Chinchilla lanigera | 长尾龙猫 | cháng wěi lóng māo |
| Macaque | Macaca mulatta | 猕猴 | mí hóu |
| Marmoset | Callithrix jacchus | 狨 | róng |
| Medaka | Oryzias latipes | 青鳉 | qīng jiāng |
| Megabat | Pteropus vampyrus | 狐蝠 | hú fú |
| Microbat | Myotis lucifugus | 莹鼠耳蝠 | Yíng shǔ ěr fú |
| Mouse 129S1/SvImJ | Mus musculus | 小鼠129S1 / SvImJ | Xiāoshǔ 129S1/ SvImJ |
| Mouse A/J | Mus musculus | 小鼠A / J | Xiāoshǔ A/ J |
| Mouse AKR/J | Mus musculus | 小鼠AKR / J | xiǎo shǔ AKR/ J |
| Mouse BALB/cJ | Mus musculus | 小鼠BALB / cJ | Xiāoshǔ BALB/ cJ |
| Mouse C3H/HeJ | Mus musculus | 小鼠C3H / HeJ | Xiāoshǔ C3H/ HeJ |
| Mouse C57BL/6NJ | Mus musculus | 小鼠C57BL / 6NJ | xiǎo shǔ C57BL/ 6NJ |
| Mouse CAST/EiJ | Mus musculus castaneus | 小鼠CAST / EiJ | Xiāoshǔ CAST/ EiJ |
| Mouse CBA/J | Mus musculus | 小鼠CBA / J | xiǎo shǔ CBA/ J |
| Mouse DBA/2J | Mus musculus | 小鼠DBA / 2J | Xiāoshǔ DBA/ 2J |
| Mouse FVB/NJ | Mus musculus | 小鼠FVB / NJ | xiǎo shǔ FVB/ NJ |
| Mouse LP/J | Mus musculus | 小鼠LP / J | Xiāoshǔ LP/ J |
| Mouse Lemur | Microcebus murinus | 小鼠狐猴 | Xiāoshǔ hú hóu |
| Mouse NOD/ShiLtJ | Mus musculus | 小鼠NOD / ShiLtJ | Xiāoshǔ NOD/ ShiLtJ |
| Mouse NZO/HlLtJ | Mus musculus | 小鼠NZO / HlLtJ | Xiāoshǔ NZO/ HlLtJ |
| Mouse PWK/PhJ | Mus musculus musculus | 小鼠PWK / PhJ | Xiāoshǔ PWK/ PhJ |
| Mouse WSB/EiJ | Mus musculus domesticus | 小鼠WSB / EiJ | Xiāoshǔ WSB/ EiJ |
| Naked mole-rat female | Heterocephalus glaber | 裸鼹鼠 | luǒ yǎnshǔ |
| Naked mole-rat male | Heterocephalus glaber | 裸鼹鼠 | luǒ yǎnshǔ |
| Northern American deer mouse | Peromyscus maniculatus bairdii | 北美鹿鹿 | běiměi lù lù |
| Olive baboon | Papio anubis | 东非狒狒 | Dōngfēi fèifèi |
| Opossum | Monodelphis domestica | 短尾负鼠 | Duǎn wěi fù shǔ |
| Orangutan | Pongo abelii | 苏门达腊猩猩 | Sū mén dá là xīngxīng |
| Panda | Ailuropoda melanoleuca | 熊猫 | xióngmāo |
| Pig | Sus scrofa | 野猪 | Yězhū |
| Pika | Ochotona princeps | 鼠兔 | shǔ tù |
| Platyfish | Xiphophorus maculatus | 新月鱼 | xīn yuè yú |
| Platypus | Ornithorhynchus anatinus | 鸭嘴兽 | yāzuǐshòu |
| Prairie vole | Microtus ochrogaster | 草原田鼠 | Cǎoyuán tiánshǔ |
| Rabbit | Oryctolagus cuniculus | 家兔 | tùzǐ |
| Rat | Rattus norvegicus | 褐家鼠 | Hè jiā shǔ |
| Ryukyu mouse | Mus caroli | 月鼠 | Yuè shǔ |
| Saccharomyces cerevisiae | Saccharomyces cerevisiae | 酿酒酵母 | niàngjiǔ xiào mǔ |
| Sheep | Ovis aries | 绵羊 | Miányáng |
| Shrew | Sorex araneus | 鼩鼱 | Qú jīng |
| Shrew mouse | Mus pahari | 锡金小鼠 | Xíjīn xiǎo shǔ |
| Sloth | Choloepus hoffmanni | 霍氏树懒 | Huò shì shù lǎn |
| Spotted gar | Lepisosteus oculatus | 雀鳝 | Què shàn |
| Squirrel | Ictidomys tridecemlineatus | 松鼠 | sōngshǔ |
| Stickleback | Gasterosteus aculeatus | 棘鱼 | jí yú |
| Tarsier | Carlito syrichta | 眼镜猴 | yǎnjìng hóu |
| Tasmanian devil | Sarcophilus harrisii | 袋獾 | Dài huān |
| Tetraodon | Tetraodon nigroviridis | 黑斑鲀 | Hēi bān tún |
| Tilapia | Oreochromis niloticus | 罗非鱼 | luó fēi yú |
| Tree Shrew | Tupaia belangeri | 树闙 | shù qǐ |
| Turkey | Meleagris gallopavo | 火鸡 | Huǒ jī |
| Upper Galilee mountains blind mole rat | Nannospalax galili | 上加利利山瞎鼹鼠 | shàng jiā lì lì shān xiā yǎn shǔ |
| Vervet-AGM | Chlorocebus sabaeus | 绿猴 | Lǜ hóu |
| Wallaby | Notamacropus eugenii | 袋鼠 | dàishǔ |
| Xenopus | Xenopus tropicalis | 非洲爪蟾 | fēizhōu zhǎo chán |
| Zebra Finch | Taeniopygia guttata | 斑马雀 | bānmǎ què |
用ensembl基因组的理由：
同样用Ensembl算TPM，结果还是不一样？ | Ensembl的注意事项
https://blog.sciencenet.cn/blog-3372875-1090620.html
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