> mrun<-echidnaT(es0.file="MET.es0", trait=~yield+t2, + fixed=y~1+Loc, + random=c(~Genotype:Loc,~Genotype:xfa2(Loc)), + residual=c(R1~sat(Loc):ar1(Col):ar1(Row),R2~sat(Loc):units), + batch=T, + met=T) Program starts running batch analysis ------ Program runs for 2 more G-structure at one time. Program runs for 2 more R-structure at one time.
run trait yield -- -- --: run G1 -- random effects: Genotype:Loc
run R1 -- residual effects: sat(Loc):ar1(Col):ar1(Row) Running Echidna for analysis: yield
Sun Feb 14 16:16:02 2021
Iteration LogL NEDF 1 1 -1289.61 630 2 2 -1248.28 630 3 3 -1213.33 630 4 4 -1205.09 630 5 5 -1204.11 630 6 6 -1204.05 630 7 7 -1204.05 630 Sun Feb 14 16:16:02 2021 LogL Converged
run G1 -- random effects: Genotype:Loc
run R2 -- residual effects: sat(Loc):units
Running Echidna for analysis: yield
Sun Feb 14 16:16:03 2021
Iteration LogL NEDF 1 1 -1310.30 630 2 2 -1250.82 630 3 3 -1239.42 630 4 4 -1238.61 630 5 5 -1238.60 630 6 6 -1238.60 630 Sun Feb 14 16:16:03 2021 LogL Converged
run G2 -- random effects: Genotype:xfa2(Loc) run R1 -- residual effects: sat(Loc):ar1(Col):ar1(Row) Running Echidna for analysis: yield
Sun Feb 14 16:16:04 2021
Iteration LogL NEDF 1 1 -1311.29 630 2 2 -1281.15 630 3 3 -1222.34 630 4 4 -1211.13 630 5 5 -1190.16 630 6 6 -1186.36 630 7 7 -1183.56 630 8 8 -1181.45 630 9 9 -1179.86 630 10 10 -1178.65 630 11 11 -1177.75 630 12 12 -1177.07 630 13 13 -1175.09 630 14 14 -1175.02 630 15 15 -1174.98 630 16 16 -1174.98 630 Sun Feb 14 16:16:05 2021 LogL Converged
run G2 -- random effects: Genotype:xfa2(Loc) run R2 -- residual effects: sat(Loc):units
Running Echidna for analysis: yield
Sun Feb 14 16:16:05 2021
Iteration LogL NEDF 1 1 -1333.17 630 2 2 -1269.21 630 3 3 -1230.90 630 4 4 -1218.47 630 5 5 -1213.82 630 6 6 -1212.07 630 7 7 -1211.38 630 8 8 -1211.09 630 9 9 -1210.98 630 10 10 -1210.94 630 11 11 -1210.93 630 12 12 -1210.93 630 Sun Feb 14 16:16:06 2021 LogL Converged
run trait t2 -- -- --: run G1 -- random effects: Genotype:Loc
run R1 -- residual effects: sat(Loc):ar1(Col):ar1(Row) Running Echidna for analysis: t2
Sun Feb 14 16:16:06 2021
Iteration LogL NEDF 1 1 -1505.75 642 2 2 -1348.55 642 3 3 -1311.52 642 4 4 -1306.99 642 5 5 -1306.85 642 6 6 -1306.85 642 Sun Feb 14 16:16:07 2021 LogL Converged
run G1 -- random effects: Genotype:Loc
run R2 -- residual effects: sat(Loc):units
Running Echidna for analysis: t2
Sun Feb 14 16:16:07 2021
Iteration LogL NEDF 1 1 -1492.14 642 2 2 -1403.50 642 3 3 -1326.30 642 4 4 -1313.38 642 5 5 -1312.65 642 6 6 -1312.64 642 Sun Feb 14 16:16:08 2021 LogL Converged
run G2 -- random effects: Genotype:xfa2(Loc) run R1 -- residual effects: sat(Loc):ar1(Col):ar1(Row) Running Echidna for analysis: t2
Sun Feb 14 16:16:08 2021
Iteration LogL NEDF 1 1 -1547.90 642 2 2 -1486.87 642 3 3 -1439.19 642 4 4 -1402.68 642 5 5 -1375.05 642 6 6 -1354.31 642 7 7 -1338.94 642 8 8 -1327.60 642 9 9 -1308.18 642 10 10 -1305.47 642 11 11 -1303.56 642 12 12 -1302.20 642 13 13 -1301.24 642 14 14 -1300.55 642 15 15 -1298.89 642 16 16 -1298.82 642 17 17 -1298.78 642 18 18 -1298.78 642 Sun Feb 14 16:16:09 2021 LogL Converged
run G2 -- random effects: Genotype:xfa2(Loc) run R2 -- residual effects: sat(Loc):units
Running Echidna for analysis: t2
Sun Feb 14 16:16:10 2021
Iteration LogL NEDF 1 1 -1526.90 642 2 2 -1455.98 642 3 3 -1371.10 642 4 4 -1331.56 642 5 5 -1314.58 642 6 6 -1307.65 642 7 7 -1305.60 642 8 8 -1305.04 642 9 9 -1304.73 642 10 10 -1304.69 642 11 11 -1304.67 642 12 12 -1304.64 642 13 13 -1304.62 642 14 14 -1304.60 642 15 15 -1304.60 642 Sun Feb 14 16:16:10 2021 LogL Converged