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Tandy Warnow教授谈计算生命之树

已有 3434 次阅读 2017-5-17 08:21 |系统分类:科研笔记| 基因组学, 挑战, 计算生物学, 生命之树, 系统发育基因组学

重建生命之树已经进入了组学时代。数据分析中存在的计算限制、问题和挑战依然存在。转载了Tandy Warnow教授在YouTube上的四个学术报告,和大家分享、共同学习。

注意:报告文件比较大,均在100-500MB左右。


http://user.qzone.qq.com/425414123/photo/V13qrwNW1ANlxg/


    Tandy Warnow

    Founder Professor of Engineering
    Professor of the Departments of Computer Science and Bioengineering
    Institute for Genomic Biology, Biocomplexity Theme
    National Center for Supercomputing Applications
    Affiliate in the departments of Electrical and Computer Engineering, Mathematics, Statistics, Animal Biology, Entomology, and Plant Biology
    PhD (Mathematics) University of California at Berkeley, 1991
    B.S. (Mathematics) University of California at Berkeley, 1984


    Current NSF Funding: My research in currently funded by three grants from the National Science Foundation.

    • Multiple sequence alignment, funded by NSF grant ABI-1458652, beginning August 2015. This project will develop new methods for multiple sequence alignment, building on our SATé, PASTA, and UPP methods.

    • Metagenomics, funded by NSF grant III:AF:1513629. This is a collaborative grant with the University of Maryland, for new methods for metagenomic dataset analysis, building on our TIPP method for taxon identification of reads in a metagenomic sample.

    • Graph-Theoretic Algorithms to Improve Phylogenomic Analyses, funded by NSF grant CCF-1535977. I am the overall PI, and this project is collaborative with Satish Rao (UC Berkeley PI) and Chandra Chekuri (UIUC). We are developing new theoretical computer science and discrete algorithms for improving the estimation of large species and gene trees, and specifically enabling statistical methods to scale to ultra-large datasets.

    Recent NSF funding has supported work in phylogenomics, described here. This is still an area of very active research in my group. I also recently benefited from support of the John P. Simon Guggenheim Foundation, and earlier support from the David and Lucile Packard Foundation, the Radcliffe Institute for Advanced Study at Harvard University, the Program for Evolutionary Dynamics at Harvard University, and Microsoft Research, New England. The Founder Professorship is funded through the Grainger Engineering Breakthroughs Initiative, which is supporting development of research in Big Data and Bioengineering at UIUC. I am grateful to the National Science Foundation for its continuous support since 1994. See this page for completed projects funded by NSF, starting in 2001.



    http://tandy.cs.illinois.edu




https://blog.sciencenet.cn/blog-536560-1055373.html

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