# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz More often than not, when a phylogenetic dataset is divided into smaller partitions, each one gives rise to trees that have different topologies. One ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Polytomy is a term for an internal node of a cladogram that has more than two immediate descendents (i.e, sister taxa). In contrast, any node that has only two immed ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Ancestral state reconstruction : Continuous characters can be reconstructed using maximum likelihood, generalised least squares or independent contrasts &n ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Utility functions: These packages include functions for manipulating trees or associated data. ape has &nb ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Here we present PhySortR, a fast, flexible R package for screening and sorting phylogenetic trees. The command-line package provides the quick and highly flexibl ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Phylogenomics increasingly involves the screening of thousands of phylogenetic trees using specialised sorting algorithms that assign phylogenetic trees a clas ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Background Phylogenetic trees are hierarchical structures used for representing the inter-relationships between biological entities. They are the most c ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz An approximately unbiased (AU) test that uses a newly devised multiscale bootstrap technique was developed for general hypothesis testing of r ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz Likelihood-based statistical tests of competing evolutionary hypotheses (tree topologies) have been available for approximately a decade. By far the mo ...
# 编者信息 熊荣川 明湖实验室 xiongrongchuan@126.com http://blog.sciencenet.cn/u/Bearjazz The Shimodaira–Hasegawa test (SH; ), which is also based on a non-parametric bootstrap, was developed to compare multiple topologies. For this test, ...