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Introgression analysis based on NGS

已有 6089 次阅读 2014-1-2 22:26 |系统分类:科研笔记| Introgression

In wiki,Introgression, also known as introgressive hybridization, in genetics (particularly plant genetics) is the movement of a gene (gene flow) from one species into the gene pool of another by the repeated backcrossing of an interspecific hybrid with one of its parent species. Purposeful introgression is a long-term process; it may take many hybrid generations before the backcrossing occurs.

At present, a lot of researchers have focused the introgression phenomenon with the NGS tools especially the Reduced Representation Library methods.

Here I just list some introgression analysis publications in plants or animals based on NGS.  


1. McNally KL, Childs KL, Bohnert R, Davidson RM, Zhao K, et al. (2009) Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc Natl Acad Sci U S A 106: 12273-12278.

2. Morris GP, Ramu P, Deshpande SP, Hash CT, Shah T, et al. (2013) Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc Natl Acad Sci U S A 110: 453-458.

3. Hohenlohe PA, Day MD, Amish SJ, Miller MR, Kamps-Hughes N, et al. (2013) Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing. Molecular Ecology 22: 3002-3013.
4. Hyma KE, Fay JC (2013) Mixing of vineyard and oak-tree ecotypes of Saccharomyces cerevisiae in North American vineyards. Molecular Ecology 22: 2917-2930.
5. Jones JC, Fan S, Franchini P, Schartl M, Meyer A (2013) The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing. Molecular Ecology 22: 2986-3001.
6. Jones JC, Fan S, Franchini P, Schartl M, Meyer A (2013) The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing. Molecular Ecology 22: 2986-3001.  

7.Miller W, Schuster SC, Welch AJ, Ratan A, Bedoya-Reina OC, et al. (2012) Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change. Proc Natl Acad Sci U S A 109: E2382-2390.




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