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笔记

已有 5051 次阅读 2014-1-12 15:20 |系统分类:科研笔记

Genomics: Comparisons across cancers

Mutational landscape and significance across 12 major cancer types

Signatures of mutational processes in human cancer

Mutational heterogeneity in cancer and the search for new cancer-associated genes

Genetic Interactions in Cancer Progression and Treatment

The Cancer Genome Atlas Pan-Cancer analysis project

http://www.nature.com/tcga/

http://www.biomedcentral.com/1471-2164/7/278

Emerging landscape of oncogenic signatures across human cancers

Inferring tumour purity and stromal and immune cell admixture from expression data

Analysis of microRNA-target interactions across diverse cancer types

TCPA: a resource for cancer functional proteomics data

The mutational landscape of phosphorylation signaling in cancer

Network-based stratification of tumor mutations

Finding common ground in cancer research

   The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

Systematic identification of genomic markers of drug sensitivity in cancer cells

Inconsistency in large pharmacogenomic studies

Drug development: Raise standards for preclinical cancer research

Believe it or not: how much can we rely on published data on potential drug targets?

Why Most Published Research Findings Are False

Innate and adaptive immune cells in the tumor microenvironment

http://arxiv.org/list/q-bio/recent (预印本文献库 定量生物学)

http://www.niaid.nih.gov/researchfunding/grant/pages/appsamples.aspx (NIAID各类标书模板)


Teaching Bioinformatics in Concert

Visual analytics in healthcare education: exploring novel ways to analyze and represent big data in undergraduate medical education

http://www.cell.com/40

办公工具

http://smallpdf.com/cn/unlock-pdf (pdf解密)

https://freemypdf.com/    (pdf解密)

http://www.filewatcher.com/ (ftp文件查找)

人体解剖图谱

http://www.anatomyatlases.org/atlasofanatomy/  

工具蛋白

https://code.google.com/p/peptide-shaker/

https://skyline.gs.washington.edu/labkey/project/home/software/Skyline/begin.view?

云计算

http://www.ebi.ac.uk/Tools/rcloud/

cloud.sagemath.com

http://www.louisaslett.com/RStudio_AMI/

工具基因

http://medicalgenomics.org/rna_seq_atlas

http://brb.nci.nih.gov/BRB-ArrayTools.html

http://rmaexpress.bmbolstad.com/

http://refdic.rcai.riken.jp/welcome.cgi

http://www.genenames.org/activities/human-and-mouse-orthologous-gene-nomenclature-humot

SAM http://stats-vm4.stanford.edu/sam/servlet/ClickWrapServlet

i-gsea4gwas http://gsea4gwas.psych.ac.cn/  

GSEA-SNP http://www.nr.no/pages/samba/area_emr_smbi_gseasnp

数据基因

Personal Genome Project: Harvard http://www.personalgenomes.org/harvard/data

COSMIC somatic mutation:http://cancer.sanger.ac.uk/cancergenome/projects/cosmic/

https://immport.niaid.nih.gov

miRNA及相关

functional enrichmenthttp://www.cuilab.cn/tam

http://cmrn.systemsbiology.net/compendium/

experimentally validatedhttp://mirtarbase.mbc.nctu.edu.tw/

http://www.mirbase.org/search.shtml

http://www.microrna.org/


数据蛋白

nci CPTAC https://cptc-xfer.uis.georgetown.edu/publicData/

博客

http://davetang.org/muse/

网络工具

q8daili.com

https://www.vpnbook.com/webproxy

https://www.hidemyass.com/proxy

http://www.reddit.com/

http://www.solidot.org/

http://cn.bing.com/

https://www.yahoo.com/

https://www.pinterest.com/

stackoverflow.com

http://www.smzdm.com/

www.carmenta.com

新闻

Nature Index China tables http://www.nature.com/nature/journal/v516/n7531_supp/full/516S77a.html

http://retractionwatch.com/

空间

www.ys168.com

http://1000eb.com/

Useful URL for drug therapy

http://www.broadinstitute.org/ctrp/

http://www.broadinstitute.org/cmap/#

http://www.cancerrxgene.org/downloads/

https://cabig-stage.nci.nih.gov/community/caArray_GSKdata/

http://cancer.sanger.ac.uk/cancergenome/projects/cell_lines/

http://cancergenome.nih.gov/

http://bioinformatics.mdanderson.org/main/TCPA:Overview

概念

UNIVERSAL AND DEGENERATE BASEShttp://www.glenresearch.com/GlenReports/GR8-11.html

机构

http://www.caltech.edu/content/research-center-links

商业公司

http://www.completegenomics.com/

https://www.assaydepot.com

www.conversantbio.com

numedii.com

www.nunahealth.com

www.praedicat.com

flipora.com

www.personalis.com

selventa.com

www.23andme.com

http://www.wegene.com/

http://ml.memect.com/

http://blog.csdn.net/column/details/why-bug.html

http://www.similarsites.com/


备忘

gene 1.0 st和gene 1.1 st无差别

2015




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