“We use Autodock Vina with the Autodock Vina plugin for PyMOL written by Daniel Seeligerto perform docking of various lipids and inhibitors to crystal structures of Lipases. Docking results are compared with experimental biochemical in vitro activity measurements of the enzymes using automatic titration techniques in our Laboratory (Results will be published soon). We use Autodock Vina instead of Autodock because of its faster search algorithm and the parallel execution of the code on multi core processors (for a comparison seeOlegs Trotts page at Scripps). The PyMOL plugin permits to easily setup and execute an Autodock Vina run, and display the results in the Pymol graphical windows for their interpretation. We adapted the original code of the plugin, which was developed to be used in a Linux environment to function flawlessly under Windows XP, Vista or Windows 7 (32 and 64 bits).”