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TCGA barcode
一个很好的介绍 TCGA页面
http://www.bio-info-trainee.com/category/cancer
癌症和肿瘤基因图谱 (The Cancer Genome Atlas, TCGA)
参考: https://wiki.nci.nih.gov/display/TCGA/TCGA+barcode
参考 https://wenku.baidu.com/view/2afdd241ad51f01dc381f131.html #讲解如何从网页下载等
参考: http://www.360doc.com/content/17/0428/22/19913717_649460973.shtml #提供一个下载小软件
参考: https://zhuanlan.zhihu.com/p/26618099
Sample 01-10 是癌组织; 11-19 是正常组织。
Project: 项目名称
TSS: Tissue source site 组织来源
Participant: Study participant
Sample: Sample type
Vial: Order of sample in a sequence of samples
Portion: Order of portion in asequence of 100-120 mg sample portions
Analyte: Molecular type of analyte for analysis
Plate : Order of plate in a sequence of 96-well plates
Center: Sequencing or characterization center that will receive the aliquot for analysis
各类癌症:
肾上腺皮质 | Adrenocortical carcinoma | ACC | 92 | Browse | Browse |
膀胱,尿路上皮 | Bladder urothelial carcinoma | BLCA | 412 | Browse | Browse |
乳腺癌 | Breast invasive carcinoma | BRCA | 1098 | Browse | Browse |
子宫颈 | Cervical and endocervical cancers | CESC | 307 | Browse | Browse |
胆管癌 | Cholangiocarcinoma | CHOL | 36 | Browse | Browse |
结肠腺癌 | Colon adenocarcinoma | COAD | 460 | Browse | Browse |
大肠腺癌 | Colorectal adenocarcinoma | COADREAD | 631 | Browse | Browse |
淋巴肿瘤弥漫性大B细胞淋巴瘤 | Lymphoid Neoplasm Diffuse Large B-cell Lymphoma | DLBC | 58 | Browse | Browse |
食管 | Esophageal carcinoma | ESCA | 185 | Browse | Browse |
FFPE试点二期 | FFPE Pilot Phase II | FPPP | 38 | None | Browse |
胶质母细胞瘤 | Glioblastoma multiforme | GBM | 613 | Browse | Browse |
脑胶质瘤 | Glioma | GBMLGG | 1129 | Browse | Browse |
头颈部鳞状细胞癌 | Head and Neck squamous cell carcinoma | HNSC | 528 | Browse | Browse |
肾嫌色 | Kidney Chromophobe | KICH | 113 | Browse | Browse |
泛肾 | Pan-kidney cohort (KICH+KIRC+KIRP) | KIPAN | 973 | Browse | Browse |
肾透明细胞癌 | Kidney renal clear cell carcinoma | KIRC | 537 | Browse | Browse |
肾乳头细胞癌 | Kidney renal papillary cell carcinoma | KIRP | 323 | Browse | Browse |
急性髓系白血病 | Acute Myeloid Leukemia | LAML | 200 | Browse | Browse |
脑低级神经胶质瘤 | Brain Lower Grade Glioma | LGG | 516 | Browse | Browse |
肝癌 | Liver hepatocellular carcinoma | LIHC | 377 | Browse | Browse |
肺腺癌 | Lung adenocarcinoma | LUAD | 585 | Browse | Browse |
肺鳞状细胞癌 | Lung squamous cell carcinoma | LUSC | 504 | Browse | Browse |
间皮瘤 | Mesothelioma | MESO | 87 | Browse | Browse |
卵巢浆液性囊腺癌 | Ovarian serous cystadenocarcinoma | OV | 602 | Browse | Browse |
胰腺癌 | Pancreatic adenocarcinoma | PAAD | 185 | Browse | Browse |
嗜铬细胞瘤和副神经节瘤 | Pheochromocytoma and Paraganglioma | PCPG | 179 | Browse | Browse |
前列腺癌 | Prostate adenocarcinoma | PRAD | 499 | Browse | Browse |
直肠腺癌 | Rectum adenocarcinoma | READ | 171 | Browse | Browse |
肉瘤 | Sarcoma | SARC | 260 | Browse | Browse |
皮肤皮肤黑色素瘤 | Skin Cutaneous Melanoma | SKCM | 470 | Browse | Browse |
胃腺癌 | Stomach adenocarcinoma | STAD | 443 | Browse | Browse |
胃和食管癌 | Stomach and Esophageal carcinoma | STES | 628 | Browse | Browse |
睾丸生殖细胞肿瘤 | Testicular Germ Cell Tumors | TGCT | 150 | Browse | Browse |
甲状腺癌 | Thyroid carcinoma | THCA | 503 | Browse | Browse |
胸腺瘤 | Thymoma | THYM | 124 | Browse | Browse |
子宫内膜癌 | Uterine Corpus Endometrial Carcinoma | UCEC | 560 | Browse | Browse |
子宫癌肉瘤 | Uterine Carcinosarcoma | UCS | 57 | Browse | Browse |
葡萄膜黑色素瘤 | Uveal Melanoma | UVM | 80 | Browse | Browse |
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