Science Blog of Dr. Yuan分享 This blog is mainly on Molecular molecular modelling and simulations


MetadynView, an online tool for metaMD analysis

已有 1225 次阅读 2017-11-6 00:12 |个人分类:科研笔记|系统分类:科研笔记

MetadynView is a web tool for visualization and analysis of free energy surfaces calculated by metadynamics method, in particular by Plumed package. You can try the original version or the new version (SVG output). Details on Metadyn View and its algorithm can be found in P. Hošek & V. Spiwok: Comput. Phys. Commun198, 222-229 (2016).

In the latest version, users can export the online results to a scalable .SVG file. More interestingly, users can also play a movie for the FES sampling pathway.  


Online analysis:

User manual:

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