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原子雕刻技术:Al和Mg晶体,相同的团簇
Al是立方晶体(a=4.049),Mg是六方晶体(a=3.209,c=5.211),前者的空间群是225,原子占位4a;后者的空间群是194,原子占位2c。
但是,从局域看,Al和Mg具有相同原子环境。
在原子空间中,参考原子Al的周围有12个其他的Al原子;参考原子Mg的周围也有12个其他的Mg原子。
对于Al来说,参考原子周围12个Al原子距离参考原子的距离都是2.8631。这12个Al原子(Vertices)在空间的分布形成1个14【=8(3)+6(4)】面体,8个面是正三边形,6个面是正四边形。在14面体上,12个Al原子可以连接成24条键,键长为2.86埃。
对于Mg来说,参考原子周围12个Mg原子距离参考原子的距离都是3.1959。这12个Mg原子(Vertices)在空间的分布形成1个14【=8(3)+6(4)】面体,8个面是正三边形,6个面是正四边形。在14面体上,12个Mg原子可以连接成24条键,键长为3.2埃。
从Al和Mg晶体中雕刻出的13个原子的团簇,其结构是完全相同的。
从第二层开始,Al和Mg的团簇结构就开始分道扬镳了。
Al的团簇结构数据:
"4a-Al"," is a reference atom"
" Cartesian = ",-2.0245,-2.0245,-2.0245
" SP coordinates=",0,0,0
" d of neighbors from the reference atom =",2.8631
" The number of neighbor atoms"," N=",12,"P=",24
" Neighbor atom:","4a-Al"
" Cartesian = ",-4.049,-4.049,-2.0245
" SP coordinates= ",-.5,-.5,0
" Neighbor atom:","4a-Al"
" Cartesian = ",-4.049,-2.0245,-4.049
" SP coordinates= ",-.5,0,-.5
" Neighbor atom:","4a-Al"
" Cartesian = ",-4.049,-2.0245,0
" SP coordinates= ",-.5,0,.5
" Neighbor atom:","4a-Al"
" Cartesian = ",-4.049,0,-2.0245
" SP coordinates= ",-.5,.5,0
" Neighbor atom:","4a-Al"
" Cartesian = ",-2.0245,-4.049,-4.049
" SP coordinates= ",0,-.5,-.5
" Neighbor atom:","4a-Al"
" Cartesian = ",-2.0245,-4.049,0
" SP coordinates= ",0,-.5,.5
" Neighbor atom:","4a-Al"
" Cartesian = ",-2.0245,0,-4.049
" SP coordinates= ",0,.5,-.5
" Neighbor atom:","4a-Al"
" Cartesian = ",-2.0245,0,0
" SP coordinates= ",0,.5,.5
" Neighbor atom:","4a-Al"
" Cartesian = ",0,-4.049,-2.0245
" SP coordinates= ",.5,-.5,0
" Neighbor atom:","4a-Al"
" Cartesian = ",0,-2.0245,-4.049
" SP coordinates= ",.5,0,-.5
" Neighbor atom:","4a-Al"
" Cartesian = ",0,-2.0245,0
" SP coordinates= ",.5,0,.5
" Neighbor atom:","4a-Al"
" Cartesian = ",0,0,-2.0245
" SP coordinates= ",.5,.5,0
Al团簇14面体结构数据:
1," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-4.049,-2.024,"---",-4.049,-2.024,-4.049
" SP coordinates=",-.5,-.5,0,"---",-.5,0,-.5
2," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-4.049,-2.024,"---",-4.049,-2.024,0
" SP coordinates=",-.5,-.5,0,"---",-.5,0,.5
3," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-4.049,-2.024,"---",-2.024,-4.049,-4.049
" SP coordinates=",-.5,-.5,0,"---",0,-.5,-.5
4," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-4.049,-2.024,"---",-2.024,-4.049,0
" SP coordinates=",-.5,-.5,0,"---",0,-.5,.5
5," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-2.024,-4.049,"---",-4.049,0,-2.024
" SP coordinates=",-.5,0,-.5,"---",-.5,.5,0
6," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-2.024,-4.049,"---",-2.024,-4.049,-4.049
" SP coordinates=",-.5,0,-.5,"---",0,-.5,-.5
7," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-2.024,-4.049,"---",-2.024,0,-4.049
" SP coordinates=",-.5,0,-.5,"---",0,.5,-.5
8," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-2.024,0,"---",-4.049,0,-2.024
" SP coordinates=",-.5,0,.5,"---",-.5,.5,0
9," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-2.024,0,"---",-2.024,-4.049,0
" SP coordinates=",-.5,0,.5,"---",0,-.5,.5
10," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,-2.024,0,"---",-2.024,0,0
" SP coordinates=",-.5,0,.5,"---",0,.5,.5
11," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,0,-2.024,"---",-2.024,0,-4.049
" SP coordinates=",-.5,.5,0,"---",0,.5,-.5
12," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-4.049,0,-2.024,"---",-2.024,0,0
" SP coordinates=",-.5,.5,0,"---",0,.5,.5
13," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-2.024,-4.049,-4.049,"---",0,-4.049,-2.024
" SP coordinates=",0,-.5,-.5,"---",.5,-.5,0
14," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-2.024,-4.049,-4.049,"---",0,-2.024,-4.049
" SP coordinates=",0,-.5,-.5,"---",.5,0,-.5
15," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-2.024,-4.049,0,"---",0,-4.049,-2.024
" SP coordinates=",0,-.5,.5,"---",.5,-.5,0
16," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-2.024,-4.049,0,"---",0,-2.024,0
" SP coordinates=",0,-.5,.5,"---",.5,0,.5
17," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-2.024,0,-4.049,"---",0,-2.024,-4.049
" SP coordinates=",0,.5,-.5,"---",.5,0,-.5
18," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-2.024,0,-4.049,"---",0,0,-2.024
" SP coordinates=",0,.5,-.5,"---",.5,.5,0
19," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-2.024,0,0,"---",0,-2.024,0
" SP coordinates=",0,.5,.5,"---",.5,0,.5
20," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",-2.024,0,0,"---",0,0,-2.024
" SP coordinates=",0,.5,.5,"---",.5,.5,0
21," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",0,-4.049,-2.024,"---",0,-2.024,-4.049
" SP coordinates=",.5,-.5,0,"---",.5,0,-.5
22," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",0,-4.049,-2.024,"---",0,-2.024,0
" SP coordinates=",.5,-.5,0,"---",.5,0,.5
23," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",0,-2.024,-4.049,"---",0,0,-2.024
" SP coordinates=",.5,0,-.5,"---",.5,.5,0
24," The distance of","4a-Al","and","4a-Al","d==",2.86
" Coordinates of these two atoms:"
" Cartesian=",0,-2.024,0,"---",0,0,-2.024
" SP coordinates=",.5,0,.5,"---",.5,.5,0
Mg团簇的结构数据:
"2c-Mg"," is a reference atom"
" Cartesian = ",1.6045,.9282,-1.3027
" SP coordinates=",.333,.667,.25
" d of neighbors from the reference atom =",3.1959
" The number of neighbor atoms"," N=",12,"P=",24
" Neighbor atom:","2c-Mg"
" Cartesian = ",-1.6045,.9282,-1.3027
" SP coordinates= ",-.667,-.333,.25
" Neighbor atom:","2c-Mg"
" Cartesian = ",0,-1.8509,-1.3027
" SP coordinates= ",.333,-.333,.25
" Neighbor atom:","2c-Mg"
" Cartesian = ",0,1.8509,-3.9082
" SP coordinates= ",-.333,.333,-.25
" Neighbor atom:","2c-Mg"
" Cartesian = ",0,1.8509,1.3027
" SP coordinates= ",-.333,.333,.75
" Neighbor atom:","2c-Mg"
" Cartesian = ",0,3.7073,-1.3027
" SP coordinates= ",-.667,.667,.25
" Neighbor atom:","2c-Mg"
" Cartesian = ",1.6045,-.9282,-3.9082
" SP coordinates= ",.667,.333,-.25
" Neighbor atom:","2c-Mg"
" Cartesian = ",1.6045,-.9282,1.3027
" SP coordinates= ",.667,.333,.75
" Neighbor atom:","2c-Mg"
" Cartesian = ",3.209,-1.8509,-1.3027
" SP coordinates= ",1.333,.667,.25
" Neighbor atom:","2c-Mg"
" Cartesian = ",3.209,1.8509,-3.9082
" SP coordinates= ",.667,1.333,-.25
" Neighbor atom:","2c-Mg"
" Cartesian = ",3.209,1.8509,1.3027
" SP coordinates= ",.667,1.333,.75
" Neighbor atom:","2c-Mg"
" Cartesian = ",3.209,3.7073,-1.3027
" SP coordinates= ",.333,1.667,.25
" Neighbor atom:","2c-Mg"
" Cartesian = ",4.8135,.9282,-1.3027
" SP coordinates= ",1.333,1.667,.25
Mg团簇14面体结构数据:
1," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",-1.605,.928,-1.303,"---",0,1.851,-3.908
" SP coordinates=",-.667,-.333,.25,"---",-.333,.333,-.25
2," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",-1.605,.928,-1.303,"---",0,1.851,1.303
" SP coordinates=",-.667,-.333,.25,"---",-.333,.333,.75
3," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",0,-1.851,-1.303,"---",1.605,-.928,-3.908
" SP coordinates=",.333,-.333,.25,"---",.667,.333,-.25
4," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",0,-1.851,-1.303,"---",1.605,-.928,1.303
" SP coordinates=",.333,-.333,.25,"---",.667,.333,.75
5," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",0,1.851,-3.908,"---",0,3.707,-1.303
" SP coordinates=",-.333,.333,-.25,"---",-.667,.667,.25
6," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",0,1.851,1.303,"---",0,3.707,-1.303
" SP coordinates=",-.333,.333,.75,"---",-.667,.667,.25
7," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",1.605,-.928,-3.908,"---",3.209,-1.851,-1.303
" SP coordinates=",.667,.333,-.25,"---",1.333,.667,.25
8," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",1.605,-.928,1.303,"---",3.209,-1.851,-1.303
" SP coordinates=",.667,.333,.75,"---",1.333,.667,.25
9," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",3.209,1.851,-3.908,"---",3.209,3.707,-1.303
" SP coordinates=",.667,1.333,-.25,"---",.333,1.667,.25
10," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",3.209,1.851,-3.908,"---",4.813,.928,-1.303
" SP coordinates=",.667,1.333,-.25,"---",1.333,1.667,.25
11," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",3.209,1.851,1.303,"---",3.209,3.707,-1.303
" SP coordinates=",.667,1.333,.75,"---",.333,1.667,.25
12," The distance of","2c-Mg","and","2c-Mg","d==",3.2
" Coordinates of these two atoms:"
" Cartesian=",3.209,1.851,1.303,"---",4.813,.928,-1.303
" SP coordinates=",.667,1.333,.75,"---",1.333,1.667,.25
13," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",0,1.851,1.303,"---",3.209,1.851,1.303
" SP coordinates=",-.333,.333,.75,"---",.667,1.333,.75
14," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",0,3.707,-1.303,"---",3.209,3.707,-1.303
" SP coordinates=",-.667,.667,.25,"---",.333,1.667,.25
15," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",1.605,-.928,-3.908,"---",3.209,-1.851,-1.303
" SP coordinates=",.667,.333,-.25,"---",1.333,.667,.25
16," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",1.605,-.928,-3.908,"---",3.209,1.851,-3.908
" SP coordinates=",.667,.333,-.25,"---",.667,1.333,-.25
17," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",1.605,-.928,1.303,"---",3.209,-1.851,-1.303
" SP coordinates=",.667,.333,.75,"---",1.333,.667,.25
18," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",1.605,-.928,1.303,"---",3.209,1.851,1.303
" SP coordinates=",.667,.333,.75,"---",.667,1.333,.75
19," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",3.209,-1.851,-1.303,"---",4.813,.928,-1.303
" SP coordinates=",1.333,.667,.25,"---",1.333,1.667,.25
20," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",3.209,1.851,-3.908,"---",3.209,3.707,-1.303
" SP coordinates=",.667,1.333,-.25,"---",.333,1.667,.25
21," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",3.209,1.851,-3.908,"---",4.813,.928,-1.303
" SP coordinates=",.667,1.333,-.25,"---",1.333,1.667,.25
22," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",3.209,1.851,1.303,"---",3.209,3.707,-1.303
" SP coordinates=",.667,1.333,.75,"---",.333,1.667,.25
23," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",3.209,1.851,1.303,"---",4.813,.928,-1.303
" SP coordinates=",.667,1.333,.75,"---",1.333,1.667,.25
24," The distance of","2c-Mg","and","2c-Mg","d==",3.21
" Coordinates of these two atoms:"
" Cartesian=",3.209,3.707,-1.303,"---",4.813,.928,-1.303
" SP coordinates=",.333,1.667,.25,"---",1.333,1.667,.25
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