2018年第16周小麦文献推荐（4.29）

最近3010份水稻基因组重测序的文章在nature发表。我们小麦里除了去年plant journal上正式发表的18个小麦重测序的文章外，其他的还暂未正式发表。国内也有不少单位在进行重测序的工作。今夕不同往日，如今再开展小麦重测序工作，还除了使用基本的二代测序手段，最好还得加上一些最近2-3年流行的测序技术和方法，比如Hi-C, 10Xgenomics等等。说到这里，不得不提一下，当下正在进行的小麦 10+ genome项目（如下图），目前这些数据暂时还不能访问。显然仅有中国春一个参考基因组是不够的，希望这些项目能够早日完成和释放数据。另外还有6个材料的数据已经公开（下图中的W2RAP Assemblies)，后面我们会陆续放到我们的网站上。

下面我们我们就来看看本周的文献推荐。本次一共包括33篇文章，大家如有感兴趣的文章，欢迎大家给我们投稿谈谈自己的读后感，周末读一篇文献也不错。

1 Rapid detection of Puccinia triticina causing leaf rust of wheat by PCR and loop mediated isothermal amplification.

PLoS One. 2018 Apr 26;13(4):e0196409. doi: 10.1371/journal.pone.0196409. eCollection 2018. PMID:29698484
Author:  Manjunatha, C; Sharma, Sapna; Kulshreshtha, Deepika; Gupta, Sangeeta; Singh, Kartar; Bhardwaj, Subhash C; Aggarwal, Rashmi;

2 Barley beta-glucan improves metabolic condition via short-chain fatty acids produced by gut microbial fermentation in high fat diet fed mice.

PLoS One. 2018 Apr 26;13(4):e0196579. doi: 10.1371/journal.pone.0196579. eCollection 2018. PMID:29698465
Author:  Miyamoto, Junki; Watanabe, Keita; Taira, Satsuki; Kasubuchi, Mayu; Li, Xuan; Irie, Junichiro; Itoh, Hiroshi; Kimura, Ikuo;

3 Zinc isotope fractionation during grain filling of wheat and a comparison of zinc and cadmium isotope ratios in identical soil-plant systems.

New Phytol. 2018 Apr 26. doi: 10.1111/nph.15146. PMID:29696652
Author:  Wiggenhauser, Matthias; Bigalke, Moritz; Imseng, Martin; Keller, Armin; Archer, Corey; Wilcke, Wolfgang; Frossard, Emmanuel;

4 Deciphering adverse effects of heavy metals on diverse wheat germplasm on irrigation with urban wastewater of mixed municipal-industrial origin.

Environ Sci Pollut Res Int. 2018 Apr 25. pii: 10.1007/s11356-018-1996-0. doi: 10.1007/s11356-018-1996-0. PMID:29696543
Author:  Ali, Zeshan; Mujeeb-Kazi, Abdul; Quraishi, Umar Masood; Malik, Riffat Naseem;

5 Mechanisms, origin and heredity of Glu-1Ay silencing in wheat evolution and domestication.

Theor Appl Genet. 2018 Apr 25. pii: 10.1007/s00122-018-3098-2. doi: 10.1007/s00122-018-3098-2. PMID:29696298
Author:  Luo, Guangbin; Song, Shuyi; Zhao, Liru; Shen, Lisha; Song, Yanhong; Wang, Xin; Yu, Kang; Liu, Zhiyong; Li, Yiwen; Yang, Wenlong; Li, Xin; Zhan, Kehui; Zhang, Aimin; Liu, Dongcheng;

6 Mapping and characterization of the new adult plant leaf rust resistance gene Lr77 derived from Santa Fe winter wheat.

Theor Appl Genet. 2018 Apr 25. pii: 10.1007/s00122-018-3097-3. doi: 10.1007/s00122-018-3097-3. PMID:29696297
Author:  Kolmer, James A; Su, Zhenqi; Bernardo, Amy; Bai, Guihua; Chao, Shiaoman;

7 Targeted mutagenesis in wheat microspores using CRISPR/Cas9.

Sci Rep. 2018 Apr 25;8(1):6502. doi: 10.1038/s41598-018-24690-8. PMID:29695804
Author:  Bhowmik, Pankaj; Ellison, Evan; Polley, Brittany; Bollina, Venkatesh; Kulkarni, Manoj; Ghanbarnia, Kaveh; Song, Halim; Gao, Caixia; Voytas, Daniel F; Kagale, Sateesh;

8 A wheat caffeic acid 3-O-methyltransferase TaCOMT-3D positively contributes to both resistance to sharp eyespot disease and stem mechanical strength.

Sci Rep. 2018 Apr 25;8(1):6543. doi: 10.1038/s41598-018-24884-0. PMID:29695751
Author:  Wang, Minxia; Zhu, Xiuliang; Wang, Ke; Lu, Chungui; Luo, Meiying; Shan, Tianlei; Zhang, Zengyan;

9 Ridge-furrow with plastic film and straw mulch increases water availability and wheat production on the Loess Plateau.

Sci Rep. 2018 Apr 25;8(1):6503. doi: 10.1038/s41598-018-24864-4. PMID:29695748
Author:  Liu, Gaoyuan; Zuo, Yuhuan; Zhang, Qi; Yang, Lili; Zhao, Erlong; Liang, Lianyou; Tong, Yan' An;

10 Effect of Drought on Agronomic Traits of Rice and Wheat: A Meta-Analysis.

Int J Environ Res Public Health. 2018 Apr 24;15(5). pii: ijerph15050839. doi: 10.3390/ijerph15050839. PMID:29695095
Author:  Zhang, Jinmeng; Zhang, Shiqiao; Cheng, Min; Jiang, Hong; Zhang, Xiuying; Peng, Changhui; Lu, Xuehe; Zhang, Minxia; Jin, Jiaxin;

11 Variation in the Microbiome, Trichothecenes, and Aflatoxins in Stored Wheat Grains in Wuhan, China.

Toxins (Basel). 2018 Apr 24;10(5). pii: toxins10050171. doi: 10.3390/toxins10050171. PMID:29695035
Author:  Yuan, Qing-Song; Yang, Peng; Wu, Ai-Bo; Zuo, Dong-Yun; He, Wei-Jie; Guo, Mao-Wei; Huang, Tao; Li, He-Ping; Liao, Yu-Cai;

12 Fluorescent reporter lines for auxin and cytokinin signalling in barley (Hordeum vulgare).

PLoS One. 2018 Apr 25;13(4):e0196086. doi: 10.1371/journal.pone.0196086. eCollection 2018. PMID:29694399
Author:  Kirschner, Gwendolyn K; Stahl, Yvonne; Imani, Jafargholi; von Korff, Maria; Simon, Rudiger;

13 iTRAQ-Based Proteomic Analysis of Wheat Bunt Fungi Tilletia controversa, T. caries, and T. foetida.

Curr Microbiol. 2018 Apr 24. pii: 10.1007/s00284-018-1490-4. doi: 10.1007/s00284-018-1490-4. PMID:29693196
Author:  Li, Chao; Wei, Xiaoqing; Gao, Li; Chen, Wanquan; Liu, Taiguo; Liu, Bo;

14 Comparative Proteome Analysis of Wheat Flag Leaves and Developing Grains Under Water Deficit.

Front Plant Sci. 2018 Apr 10;9:425. doi: 10.3389/fpls.2018.00425. eCollection 2018. PMID:29692790
Author:  Deng, Xiong; Liu, Yue; Xu, Xuexin; Liu, Dongmiao; Zhu, Genrui; Yan, Xing; Wang, Zhimin; Yan, Yueming;

15 A constraint scaffold enhances affinity of a bivalent N-acetylglucosamine ligand against wheat germ agglutinin.

Bioorg Med Chem Lett. 2018 Apr 19. pii: S0960-894X(18)30359-7. doi: 10.1016/j.bmcl.2018.04.047. PMID:29691137
Author:  Matsushita, Takahiko; Tsuchibuchi, Koji; Koyama, Tetsuo; Hatano, Ken; Matsuoka, Koji;

16 Trace elements bioavailability to winter wheat (Triticum aestivum L.) grown subsequent to high biomass plants in a greenhouse study.

Int J Phytoremediation. 2018 May 12;20(6):574-580. doi: 10.1080/15226514.2017.1405377. PMID:29688048
Author:  Neu, Silke; Muller, Ingo; Herzig, Rolf; Dudel, E Gert;

17 Phenazine-1-carboxylic acid and soil moisture influence biofilm development and turnover of rhizobacterial biomass on wheat root surfaces.

Environ Microbiol. 2018 Apr 24. doi: 10.1111/1462-2920.14244. PMID:29687554
Author:  LeTourneau, Melissa K; Marshall, Matthew J; Cliff, John B; Bonsall, Robert F; Dohnalkova, Alice C; Mavrodi, Dmitri V; Devi, S Indira; Mavrodi, Olga V; Harsh, James B; Weller, David M; Thomashow, Linda S;

18 Feasibility of 3D UV-C treatment to reduce fungal growth and mycotoxin loads on maize and wheat kernels.

Mycotoxin Res. 2018 Apr 24. pii: 10.1007/s12550-018-0316-3. doi: 10.1007/s12550-018-0316-3. PMID:29687318
Author:  Popovic, Vladimir; Fairbanks, Nicholas; Pierscianowski, Jacob; Biancaniello, Michael; Zhou, Ting; Koutchma, Tatiana;

19 Glycoside hydrolase gene transcription by Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and monosaccharides: a proposed xylan hydrolysis mechanism.

Biotechnol Biofuels. 2018 Apr 16;11:110. doi: 10.1186/s13068-018-1110-3. eCollection 2018. PMID:29686728
Author:  Lee, Brady D; Apel, William A; Sheridan, Peter P; DeVeaux, Linda C;

20 TaAAP6-3B, a regulator of grain protein content selected during wheat improvement.

BMC Plant Biol. 2018 Apr 23;18(1):71. doi: 10.1186/s12870-018-1280-y. PMID:29685104
Author:  Jin, Xiufeng; Feng, Bo; Xu, Zhibin; Fan, Xiaoli; Liu, Jing; Liu, Qin; Zhu, Ping; Wang, Tao;

21 Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity.

BMC Genomics. 2018 Apr 23;19(1):279. doi: 10.1186/s12864-018-4680-3. PMID:29685100
Author:  Moolhuijzen, Paula; See, Pao Theen; Hane, James K; Shi, Gongjun; Liu, Zhaohui; Oliver, Richard P; Moffat, Caroline S;

22 Plant-affecting streptomycin-sensitive micro-organisms in barley monoculture soils.

New Phytol. 1996 Jun;133(2):245-252. doi: 10.1111/j.1469-8137.1996.tb01891.x. PMID:29681063
Author:  Olsson, Stig; Alstrom, Sadhna;

23 Differential responses of two Egyptian barley (Hordeum vulgare L.) cultivars to salt stress.

Plant Physiol Biochem. 2018 Apr 12;127:425-435. doi: 10.1016/j.plaphy.2018.04.012. PMID:29684827
Author:  Elsawy, Hayam I A; Mekawy, Ahmad Mohammad M; Elhity, Mahmoud A; Abdel-Dayem, Sherif M; Abdelaziz, Maha Nagy; Assaha, Dekoum V M; Ueda, Akihiro; Saneoka, Hirofumi;

24 Dehydration Stress Contributes to the Enhancement of Plant Defense Response and Mite Performance on Barley.

Front Plant Sci. 2018 Apr 6;9:458. doi: 10.3389/fpls.2018.00458. eCollection 2018. PMID:29681917
Author:  Santamaria, M E; Diaz, Isabel; Martinez, Manuel;

25 Rapid Generation of Barley Mutant Lines With High Nitrogen Uptake Efficiency by Microspore Mutagenesis and Field Screening.

Front Plant Sci. 2018 Apr 6;9:450. doi: 10.3389/fpls.2018.00450. eCollection 2018. PMID:29681915
Author:  Gao, Runhong; Guo, Guimei; Fang, Chunyan; Huang, Saihua; Chen, Jianmin; Lu, Ruiju; Huang, Jianhua; Fan, Xiaorong; Liu, Chenghong;

26 Water Stress Scatters Nitrogen Dilution Curves in Wheat.

Front Plant Sci. 2018 Apr 6;9:406. doi: 10.3389/fpls.2018.00406. eCollection 2018. PMID:29681908
Author:  Hoogmoed, Marianne; Sadras, Victor O;

27 High-mass-resolution MALDI mass spectrometry imaging reveals detailed spatial distribution of metabolites and lipids in roots of barley seedlings in response to salinity stress.

Metabolomics. 2018;14(5):63. doi: 10.1007/s11306-018-1359-3. Epub 2018 Apr 19. PMID:29681790
Author:  Sarabia, Lenin D; Boughton, Berin A; Rupasinghe, Thusitha; van de Meene, Allison M L; Callahan, Damien L; Hill, Camilla B; Roessner, Ute;

28 Identification and characterisation of a previously unknown drought tolerance-associated microRNA in barley.

Plant J. 2018 Apr 22. doi: 10.1111/tpj.13938. PMID:29681080
Author:  Zhou, Hui; Hussain, Syed Sarfraz; Hackenberg, Michael; Bazanova, Natalia; Eini, Omid; Li, Jie; Gustafson, Perry; Shi, Bujun;

29 Characteristics and nutritional value of whole wheat cracker fortified with tuna bone bio-calcium powder.

Food Chem. 2018 Sep 1;259:181-187. doi: 10.1016/j.foodchem.2018.03.124. Epub 2018 Mar 27. PMID:29680042
Author:  Benjakul, Soottawat; Karnjanapratum, Supatra;

30 Improving the physicochemical properties of whole wheat model dough by modifying the water-unextractable solids.

Food Chem. 2018 Sep 1;259:18-24. doi: 10.1016/j.foodchem.2018.03.093. Epub 2018 Mar 21. PMID:29680041
Author:  Jiang, Zhijian; Liu, Liya; Yang, Wei; Ding, Lan; Awais, Muhammad; Wang, Li; Zhou, Sumei;

31 Long-term Survival and Thermal Death Kinetics of Enterohemorrhagic Escherichia coli Serogroups O26, O103, O111 and O157 in Wheat Flour.

Appl Environ Microbiol. 2018 Apr 20. pii: AEM.00283-18. doi: 10.1128/AEM.00283-18. PMID:29678913
Author:  Forghani, Fereidoun; den Bakker, Meghan; Futral, Alexandra N; Diez-Gonzalez, Francisco;

32 Mapping of Leaf Rust Resistance Genes and Molecular Characterization of the 2NS/2AS Translocation in the Wheat Cultivar Jagger.

G3 (Bethesda). 2018 Apr 19. pii: g3.118.200058. doi: 10.1534/g3.118.200058. PMID:29674436
Author:  Xue, Shulin; Kolmer, James A; Wang, Shuwen; Yan, Liuling;

33 Genome-wide analysis of family-1 UDP glycosyltransferases (UGT) and identification of UGT genes for FHB resistance in wheat (Triticum aestivum L.).

BMC Plant Biol. 2018 Apr 19;18(1):67. doi: 10.1186/s12870-018-1286-5. PMID:29673318
Author:  He, Yi; Ahmad, Dawood; Zhang, Xu; Zhang, Yu; Wu, Lei; Jiang, Peng; Ma, Hongxiang;