冯建兴 博士

Email: jianxing.tongji(at)gmail.com

教育背景

Design and analyze algorithms mainly related to Bioinformatics.

发表论文

Zhang Yong, Nadine L. Vastenhouw, JianxingFeng, Kai Fu, Chenfei Wang, Ying Ge, Paul van Hummelen, Alexander F. Schier,and Xiaole Shirley Liu. Canonical Nucleosome Organization at Promoters Formsduring Genome Activation. Genome Research, November 27, 2013.

Jianxing Feng, Clifford A Meyer, Qian Wang, Jun S Liu, X Shirley Liu, and Yong Zhang.GFOLD: a generalized fold change for ranking differentially expressed genesfrom RNA-seq data. Bioinformatics,August 2012.

Jianxing Feng, Tao Liu, Bo Qin, Yong Zhang, and Xiaole Shirley Liu. IdentifyingChIP-seq enrichment using MACS. NatureProtocols, 7(9):1728–1740, 2012.

Rui Tian, Jianxing Feng, Xiaopeng Cai, and Yong Zhang.     Local chromatin dynamics of transcrip- tion factors implycell-lineage specific functions during cellular differentiation.  Epigenetics,7(1559- 2294):55–62, January 2012.

 Kai Fu, Qianzi Tang, Jianxing Feng, X. Shirley Liu, and YongZhang. DiNuP: a systematic approach to identify regions of differentialnucleosome positioning. Bioinformatics,June 2012.

Lin Liu, Yiqian Zhang, Jianxing Feng, Ning Zheng, Junfeng Yin,and Yong Zhang. GeSICA: genome segmentation from intrachromosomal associations.BMC Genomics, 13(1):164, May 2012.

Jianxing Feng, Tao Liu, and Yong Zhang. Using MACS to identify peaks from ChIP-Seqdata. Current Protocols in Bioinformatics/ Editoral Board, Andreas D. Baxevanis ... [et Al.], Chapter 2:Unit 2.14, June2011. PMID: 21633945.

Wei Li, Jianxing Feng, and Tao Jiang. IsoLasso: a LASSO regression approachto RNA-Seq based transcriptome assembly. Journal of Computational Biology: A Journal of Computational Molecular CellBiology, September 2011.

Jianxing Feng, Wei Li, and Tao Jiang. Inference of isoforms from short sequencereads. Journal of Computational Biology: AJournal of Computational Molecular Cell Biology, 18(3):305–321, March 2011.

Jianxing Feng, Rui Jiang, and Tao Jiang. A Max-Flow based approach to theidentification of protein complexes using protein interaction and microarraydata. IEEE/ACM Transactions onComputational Biology and Bioinformatics / IEEE, ACM, August 2010.

Jianxing Feng and Daming Zhu. Faster algorithms for sorting by transpositions andsorting by block interchanges. ACM Trans.Algorithms, 3(3):25, 2007.

个人爱好

• Reading

• Thinking and meta thinking